Showing repeats of Mus musculus (Mouse)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 151 to 175 repeats of 5087055
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3096884
3096898
AAAG
14
+
3
AAAG
uc007aet.1
3205904
3215632
-
Intergenic
118734
chr1
3096903
3096916
AAAG
13
+
3
AAAG
uc007aet.1
3205904
3215632
-
Intergenic
118716
chr1
3096913
3096954
AG
41
+
20
AG
uc007aet.1
3205904
3215632
-
Intergenic
118678
chr1
3096962
3097032
AAGG
70
+
17
AAGG
uc007aet.1
3205904
3215632
-
Intergenic
118600
chr1
3097481
3097498
AAC
17
-
5
TTG
uc007aet.1
3205904
3215632
-
Intergenic
118134
chr1
3097493
3097505
AAAAC
12
-
2
TTGTT
uc007aet.1
3205904
3215632
-
Intergenic
118127
chr1
3097496
3097511
AAAAAC
15
-
2
TTTTGT
uc007aet.1
3205904
3215632
-
Intergenic
118121
chr1
3098471
3098488
AAAAC
17
-
3
TTTTG
uc007aet.1
3205904
3215632
-
Intergenic
117144
chr1
3098489
3098502
AAAAC
13
-
2
TGTTT
uc007aet.1
3205904
3215632
-
Intergenic
117130
chr1
3098503
3098520
AAAAC
17
-
3
TTGTT
uc007aet.1
3205904
3215632
-
Intergenic
117112
chr1
3098511
3098527
AAAAAC
16
-
2
TTTTGT
uc007aet.1
3205904
3215632
-
Intergenic
117105
chr1
3098609
3098622
AGAGGC
13
-
2
CTGCCT
uc007aet.1
3205904
3215632
-
Intergenic
117010
chr1
3099935
3099947
ACCC
12
-
3
GGGT
uc007aet.1
3205904
3215632
-
Intergenic
115685
chr1
3100177
3100189
A
12
-
12
T
uc007aet.1
3205904
3215632
-
Intergenic
115443
chr1
3102097
3102109
AAATAT
12
+
2
AAATAT
uc007aet.1
3205904
3215632
-
Intergenic
113523
chr1
3102390
3102406
AACAAT
16
+
2
CAATAA
uc007aet.1
3205904
3215632
-
Intergenic
113226
chr1
3102724
3102737
AGAGGC
13
+
2
GAGGCA
uc007aet.1
3205904
3215632
-
Intergenic
112895
chr1
3102819
3102835
AAAAAC
16
+
2
AAAAAC
uc007aet.1
3205904
3215632
-
Intergenic
112797
chr1
3103182
3103196
AAAATC
14
+
2
AAATCA
uc007aet.1
3205904
3215632
-
Intergenic
112436
chr1
3103337
3103355
AAAAG
18
+
3
AAAGA
uc007aet.1
3205904
3215632
-
Intergenic
112277
chr1
3103353
3103381
AAAAG
28
+
5
AAAAG
uc007aet.1
3205904
3215632
-
Intergenic
112251
chr1
3103378
3103411
AAAAG
33
+
6
AAAGA
uc007aet.1
3205904
3215632
-
Intergenic
112221
chr1
3103407
3103436
AAAAC
29
+
5
AAAAC
uc007aet.1
3205904
3215632
-
Intergenic
112196
chr1
3103437
3103450
AAACC
13
+
2
AAACC
uc007aet.1
3205904
3215632
-
Intergenic
112182
chr1
3103446
3103466
AAAAC
20
+
4
CAAAA
uc007aet.1
3205904
3215632
-
Intergenic
112166