Showing repeats of Rattus norvegicus (Rat)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1601 to 1625 repeats of 4777636
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
1667090
1667102
AACATG
12
+
2
ACATGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
2259
chr1
1667340
1667357
AATTAT
17
+
2
ATAATT
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
2004
chr1
1667365
1667382
ATC
17
-
5
GAT
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
1979
chr1
1668622
1668637
AGAGGG
15
+
2
GAGGGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
724
chr1
1669000
1669015
ACCAGT
15
+
2
CAGTAC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
346
chr1
1670013
1670061
AC
48
+
24
AC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-652
chr1
1670241
1670253
AAAAC
12
+
2
AAAAC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-880
chr1
1671764
1671779
A
15
-
15
T
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-2403
chr1
1671983
1671997
AAAAG
14
-
2
TTTTC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-2622
chr1
1671993
1672005
A
12
-
12
T
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-2632
chr1
1672089
1672104
AGGGGG
15
-
2
CCCCTC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-2728
chr1
1672174
1672189
AGGGGG
15
-
2
CCCCTC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-2813
chr1
1673324
1673338
ACCTCC
14
+
2
CCACCT
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-3963
chr1
1675387
1675432
AC
45
+
22
AC
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6026
chr1
1675431
1675454
AG
23
+
11
AG
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6070
chr1
1675451
1675465
AAG
14
+
4
AGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6090
chr1
1675471
1675487
AGG
16
+
5
GAG
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6110
chr1
1675491
1675503
AGGGGG
12
+
2
GGAGGG
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6130
chr1
1675496
1675509
AGGG
13
+
3
GGGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6135
chr1
1675506
1675522
AG
16
+
8
GA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6145
chr1
1675523
1675538
AG
15
+
7
AG
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6162
chr1
1675535
1675606
AAG
71
+
23
AGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6174
chr1
1675605
1675619
AGGGGG
14
+
2
GGGGAG
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6244
chr1
1675612
1675629
AGGG
17
+
4
GGGA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6251
chr1
1675626
1675642
AG
16
+
8
GA
ENSRNOT00000083044.1
1669086
1669361
-
Intergenic
-6265