Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2926 to 2950 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
1471080
1471093
AACTG
13
-
2
TCAGT
ENSGALT00000093389.1
1440089
1474563
+
Intron
30991
chr1
1472131
1472145
A
14
-
14
T
ENSGALT00000096892.1
1440089
1474563
+
Intron
32042
chr1
1472371
1472383
AGGGCG
12
-
2
GCCCTC
ENSGALT00000080090.2
1440089
1475012
+
Intron
32282
chr1
1473170
1473182
AACATC
12
-
2
TGTTGA
ENSGALT00000080090.2
1440089
1475012
+
Intron
33081
chr1
1473478
1473490
AACTG
12
+
2
AACTG
ENSGALT00000080090.2
1440089
1475012
+
Intron
33389
chr1
1474302
1474316
ACACC
14
+
2
CCACA
ENSGALT00000093389.1
1440089
1474563
+
Intron
34213
chr1
1474590
1474605
AAAAAT
15
-
2
TTTATT
ENSGALT00000096892.1
1440089
1474563
+
Intergenic
34501
chr1
1474611
1474627
AAAAAG
16
-
2
TTTTCT
ENSGALT00000080090.2
1440089
1475012
+
Exon
34522
chr1
1474644
1474656
A
12
-
12
T
ENSGALT00000080090.2
1440089
1475012
+
Exon
34555
chr1
1475022
1475040
A
18
+
18
A
ENSGALT00000080090.2
1440089
1475012
+
Intergenic
34933
chr1
1475048
1475061
AAG
13
+
4
AAG
ENSGALT00000093389.1
1440089
1474563
+
Intergenic
34959
chr1
1475280
1475292
AAC
12
-
4
TTG
ENSGALT00000096892.1
1440089
1474563
+
Intergenic
35191
chr1
1475308
1475321
AAT
13
-
4
TTA
ENSGALT00000080090.2
1440089
1475012
+
Intergenic
35219
chr1
1475571
1475583
AACCC
12
+
2
CAACC
ENSGALT00000080090.2
1440089
1475012
+
Intergenic
35482
chr1
1475728
1475740
AAT
12
-
4
ATT
ENSGALT00000080090.2
1440089
1475012
+
Intergenic
35639
chr1
1476571
1476584
ACTCC
13
-
2
GAGTG
ENSGALT00000080090.2
1440089
1475012
+
Intergenic
36482
chr1
1476976
1476989
AAAGCT
13
-
2
CTTTAG
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
1795
chr1
1477329
1477383
ATCC
54
-
13
GATG
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
1401
chr1
1477467
1477483
ATCC
16
-
4
TGGA
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
1301
chr1
1477629
1477641
ATCC
12
-
3
TGGA
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
1143
chr1
1477811
1477828
ACAG
17
+
4
GACA
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
956
chr1
1477932
1477948
ACAG
16
+
4
CAGA
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
836
chr1
1478006
1478019
AGATGG
13
-
2
TCCATC
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
765
chr1
1478354
1478366
ACTGGC
12
+
2
CTGGCA
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
418
chr1
1478828
1478842
AAACCC
14
+
2
AAACCC
ENSGALT00000098867.1
1478703
1478784
-
Intergenic
-44