Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3251 to 3275 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
1708184
1708196
AAAG
12
+
3
GAAA
ENSGALT00000013282.6
1696185
1712220
+
Intron
11999
chr1
1709914
1709926
AG
12
+
6
GA
ENSGALT00000013282.6
1696185
1712220
+
Intron
13729
chr1
1711232
1711244
AAGGAG
12
-
2
TCCTTC
ENSGALT00000096214.1
1710795
1745742
-
Exon
34498
chr1
1712711
1712723
A
12
+
12
A
ENSGALT00000106077.1
1712696
1739489
-
Exon
26766
chr1
1712998
1713012
AGGGG
14
-
2
CCCCT
ENSGALT00000106077.1
1712696
1739489
-
Exon
26477
chr1
1713008
1713020
C
12
+
12
C
ENSGALT00000106077.1
1712696
1739489
-
Exon
26469
chr1
1713179
1713191
AACATT
12
+
2
TAACAT
ENSGALT00000106077.1
1712696
1739489
-
Exon
26298
chr1
1713773
1713786
AGCCTC
13
+
2
CTCAGC
ENSGALT00000096902.1
1700770
1738947
-
Intron
25161
chr1
1716258
1716270
ATC
12
-
4
ATG
ENSGALT00000096902.1
1700770
1738947
-
Intron
22677
chr1
1716351
1716364
ATCCCC
13
+
2
CCCATC
ENSGALT00000096902.1
1700770
1738947
-
Intron
22583
chr1
1717005
1717017
AAACGG
12
+
2
AACGGA
ENSGALT00000096902.1
1700770
1738947
-
Exon
21930
chr1
1718225
1718237
ACCAGC
12
-
2
TGCTGG
ENSGALT00000096902.1
1700770
1738947
-
Exon
20710
chr1
1718269
1718281
AAGAG
12
-
2
CTTCT
ENSGALT00000096902.1
1700770
1738947
-
Exon
20666
chr1
1720575
1720587
AAGCAC
12
+
2
GCACAA
ENSGALT00000096902.1
1700770
1738947
-
Intron
18360
chr1
1720806
1720818
AGCATC
12
+
2
CATCAG
ENSGALT00000096902.1
1700770
1738947
-
Exon
18129
chr1
1721495
1721510
AAAGC
15
+
3
GCAAA
ENSGALT00000096902.1
1700770
1738947
-
Intron
17437
chr1
1721507
1721521
A
14
+
14
A
ENSGALT00000096902.1
1700770
1738947
-
Intron
17426
chr1
1723187
1723201
ACACTC
14
-
2
AGTGTG
ENSGALT00000096902.1
1700770
1738947
-
Intron
15746
chr1
1724082
1724094
AAAAGG
12
-
2
TTTCCT
ENSGALT00000096902.1
1700770
1738947
-
Exon
14853
chr1
1724726
1724738
AAAAG
12
+
2
AAAAG
ENSGALT00000096902.1
1700770
1738947
-
Intron
14209
chr1
1725061
1725073
AAATG
12
+
2
AATGA
ENSGALT00000096902.1
1700770
1738947
-
Intron
13874
chr1
1726098
1726110
AAGGT
12
+
2
AAGGT
ENSGALT00000096902.1
1700770
1738947
-
Intron
12837
chr1
1729756
1729769
A
13
+
13
A
ENSGALT00000096902.1
1700770
1738947
-
Intron
9178
chr1
1730368
1730383
AAAGTG
15
-
2
CTTTCA
ENSGALT00000096902.1
1700770
1738947
-
Intron
8564
chr1
1731244
1731256
AACCC
12
+
2
CCAAC
ENSGALT00000096902.1
1700770
1738947
-
Intron
7691