Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4576 to 4600 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3045000
3045015
AAAC
15
-
3
TTTG
ENSGALT00000010457.5
2887148
3334587
+
Intron
157852
chr1
3048140
3048152
AATCAG
12
+
2
ATCAGA
ENSGALT00000010457.5
2887148
3334587
+
Intron
160992
chr1
3048691
3048707
A
16
-
16
T
ENSGALT00000010457.5
2887148
3334587
+
Intron
161543
chr1
3049850
3049862
AAAC
12
+
3
CAAA
ENSGALT00000010457.5
2887148
3334587
+
Intron
162702
chr1
3049867
3049879
AACC
12
+
3
CCAA
ENSGALT00000010457.5
2887148
3334587
+
Intron
162719
chr1
3050209
3050224
AAAC
15
+
3
AAAC
ENSGALT00000010457.5
2887148
3334587
+
Intron
163061
chr1
3050257
3050270
A
13
-
13
T
ENSGALT00000010457.5
2887148
3334587
+
Intron
163109
chr1
3050380
3050394
AGCC
14
-
3
GGCT
ENSGALT00000010457.5
2887148
3334587
+
Intron
163232
chr1
3050439
3050458
AAAAAG
19
+
3
AGAAAA
ENSGALT00000010457.5
2887148
3334587
+
Intron
163291
chr1
3050722
3050735
AAAGG
13
-
2
TTTCC
ENSGALT00000010457.5
2887148
3334587
+
Intron
163574
chr1
3050747
3050763
AGGGGG
16
-
2
CCTCCC
ENSGALT00000010457.5
2887148
3334587
+
Intron
163599
chr1
3052974
3052987
AAAAGG
13
-
2
TTCCTT
ENSGALT00000010457.5
2887148
3334587
+
Intron
165826
chr1
3053042
3053055
AAGGAG
13
+
2
AAGGAG
ENSGALT00000010457.5
2887148
3334587
+
Intron
165894
chr1
3053052
3053069
AGAGC
17
+
3
AGAGC
ENSGALT00000010457.5
2887148
3334587
+
Intron
165904
chr1
3054668
3054680
AACTAC
12
-
2
AGTTGT
ENSGALT00000010457.5
2887148
3334587
+
Intron
167520
chr1
3054732
3054744
ACATCC
12
-
2
TGGATG
ENSGALT00000010457.5
2887148
3334587
+
Intron
167584
chr1
3055374
3055386
AAGCAG
12
+
2
AGAAGC
ENSGALT00000010457.5
2887148
3334587
+
Intron
168226
chr1
3055681
3055698
AAC
17
-
5
TTG
ENSGALT00000010457.5
2887148
3334587
+
Intron
168533
chr1
3055696
3055713
AAT
17
-
5
TTA
ENSGALT00000010457.5
2887148
3334587
+
Intron
168548
chr1
3056545
3056557
AG
12
-
6
TC
ENSGALT00000010457.5
2887148
3334587
+
Intron
169397
chr1
3057799
3057811
AGCAGG
12
-
2
CCTGCT
ENSGALT00000010457.5
2887148
3334587
+
Intron
170651
chr1
3057908
3057920
ACAGC
12
-
2
TGTGC
ENSGALT00000010457.5
2887148
3334587
+
Intron
170760
chr1
3057920
3057933
AGCTCC
13
-
2
GCTGGA
ENSGALT00000010457.5
2887148
3334587
+
Intron
170772
chr1
3059654
3059667
AAGGGG
13
-
2
TTCCCC
ENSGALT00000010457.5
2887148
3334587
+
Intron
172506
chr1
3062581
3062593
ACTGAG
12
-
2
TCTCAG
ENSGALT00000010457.5
2887148
3334587
+
Intron
175433