Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4826 to 4850 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3310656
3310668
AAAGAG
12
+
2
AAAGAG
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
1696
chr1
3315220
3315233
ACTGC
13
-
2
GCAGT
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
6260
chr1
3316942
3316954
AAAAAC
12
-
2
GTTTTT
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
7982
chr1
3322134
3322146
AAATCT
12
+
2
AATCTA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
13174
chr1
3323185
3323197
AACTG
12
+
2
AACTG
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
14225
chr1
3324081
3324093
AAAGAG
12
-
2
CTCTTT
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
15121
chr1
3325321
3325333
AAAGAC
12
+
2
GACAAA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
16361
chr1
3325347
3325361
AATAC
14
+
2
TACAA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
16387
chr1
3327445
3327460
AGGGC
15
-
3
TGCCC
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
18485
chr1
3329584
3329596
AAAAGG
12
+
2
GGAAAA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
20624
chr1
3329970
3329984
A
14
-
14
T
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
21010
chr1
3330664
3330676
ACTGC
12
+
2
CACTG
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
21704
chr1
3330679
3330692
AAAAG
13
-
2
TTTCT
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
21719
chr1
3331801
3331826
A
25
-
25
T
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
22841
chr1
3331912
3331924
ACAGTG
12
+
2
AGTGAC
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
22952
chr1
3332057
3332069
AGATGG
12
-
2
TCTCCA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
23097
chr1
3333721
3333733
AAAGAG
12
-
2
TCTTTC
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
24761
chr1
3333865
3333889
A
24
+
24
A
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
24905
chr1
3333918
3333930
AAAAC
12
+
2
ACAAA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
24958
chr1
3334646
3334667
A
21
-
21
T
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
25686
chr1
3335739
3335759
AAT
20
-
6
TTA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
26779
chr1
3335765
3335783
AC
18
-
9
GT
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
26805
chr1
3335789
3335803
ACACGC
14
-
2
GTGTGC
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
26829
chr1
3335913
3335925
AAACC
12
-
2
TTTGG
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
26953
chr1
3336045
3336057
AACAGC
12
+
2
GCAACA
ENSGALT00000044352.2
3308960
3309069
+
Intergenic
27085