Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4926 to 4950 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3395674
3395687
ACACAT
13
+
2
ATACAC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-19404
chr1
3396251
3396268
A
17
+
17
A
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-18823
chr1
3397935
3397947
ACACAG
12
-
2
TCTGTG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-17144
chr1
3399303
3399323
A
20
+
20
A
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-15768
chr1
3399319
3399333
AAAAG
14
+
2
AAAAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-15758
chr1
3399331
3399343
AAAAG
12
+
2
AAAAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-15748
chr1
3401961
3401973
AAGAC
12
-
2
CTTGT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-13118
chr1
3402027
3402042
AAAAAG
15
-
2
TCTTTT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-13049
chr1
3404769
3404781
AAACTG
12
-
2
TTCAGT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-10310
chr1
3404865
3404877
AAAT
12
+
3
TAAA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-10214
chr1
3405144
3405156
ACTGAT
12
-
2
TATCAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-9935
chr1
3405864
3405877
ACACTG
13
-
2
GTCAGT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-9214
chr1
3406143
3406155
AAACTC
12
-
2
TTGAGT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-8936
chr1
3406441
3406453
AATGGG
12
+
2
ATGGGA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-8638
chr1
3406816
3406829
A
13
-
13
T
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-8262
chr1
3407320
3407332
AGATG
12
-
2
CTCAT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-7759
chr1
3407704
3407717
AAGGAG
13
-
2
TCTCCT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-7374
chr1
3407715
3407727
A
12
-
12
T
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-7364
chr1
3408213
3408225
A
12
-
12
T
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-6866
chr1
3408798
3408813
C
15
-
15
G
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-6278
chr1
3408845
3408862
AAAAAG
17
+
2
AAAAAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-6229
chr1
3409870
3409882
AAGGAG
12
-
2
CTTCTC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-5209
chr1
3410161
3410173
ACAGGC
12
+
2
GGCACA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-4918
chr1
3410438
3410452
AGGGG
14
-
2
CCCTC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-4639
chr1
3413637
3413650
A
13
+
13
A
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
-1441