Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5051 to 5075 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3524556
3524571
AAAATC
15
+
2
AAAATC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
109465
chr1
3527687
3527699
AAAAC
12
-
2
GTTTT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
112596
chr1
3528277
3528289
AATCT
12
+
2
ATCTA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
113186
chr1
3528327
3528339
ACTGAT
12
-
2
TATCAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
113236
chr1
3528526
3528539
ACATCC
13
+
2
TCCACA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
113435
chr1
3529248
3529260
AT
12
+
6
AT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
114157
chr1
3529722
3529734
AAAAAG
12
+
2
GAAAAA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
114631
chr1
3529753
3529766
AAAAAT
13
-
2
TTTATT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
114662
chr1
3530670
3530682
ACCAGC
12
-
2
GTGCTG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
115579
chr1
3531025
3531038
AAAAAG
13
+
2
GAAAAA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
115934
chr1
3531260
3531283
C
23
+
23
C
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
116169
chr1
3531527
3531546
AAC
19
-
6
GTT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
116436
chr1
3531566
3531579
AAACC
13
-
2
TTTGG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
116475
chr1
3532836
3532848
AAAAAG
12
+
2
AAAGAA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
117745
chr1
3533215
3533228
A
13
+
13
A
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
118124
chr1
3535200
3535213
AAAATG
13
+
2
GAAAAT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
120109
chr1
3535377
3535392
AAGGAG
15
+
2
AGGAGA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
120286
chr1
3535492
3535504
AGATGG
12
+
2
TGGAGA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
120401
chr1
3535548
3535560
AAAAAG
12
+
2
AAAGAA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
120457
chr1
3535627
3535639
ACACT
12
-
2
TGTAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
120536
chr1
3536584
3536596
AAAAGC
12
+
2
CAAAAG
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
121493
chr1
3537026
3537039
AGGCAT
13
-
2
ATGCCT
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
121935
chr1
3539921
3539933
AACCAC
12
+
2
ACCACA
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
124830
chr1
3542294
3542306
AAAC
12
+
3
AAAC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
127203
chr1
3544685
3544700
AAAAAC
15
+
2
AAAAAC
ENSGALT00000103191.1
3415091
3494179
+
Intergenic
129594