Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6276 to 6300 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4773251
4773265
ACTAT
14
+
2
ACTAT
ENSGALT00000011058.6
4774156
4799281
+
Intergenic
-891
chr1
4773286
4773298
ACAGC
12
-
2
CTGTG
ENSGALT00000011058.6
4774156
4799281
+
Intergenic
-858
chr1
4774564
4774576
AAAAGC
12
-
2
TTTGCT
ENSGALT00000011058.6
4774156
4799281
+
Intron
408
chr1
4776519
4776531
ACCCC
12
-
2
TGGGG
ENSGALT00000011058.6
4774156
4799281
+
Intron
2363
chr1
4777582
4777595
A
13
+
13
A
ENSGALT00000011058.6
4774156
4799281
+
Intron
3426
chr1
4778376
4778390
AAAT
14
+
3
AATA
ENSGALT00000011058.6
4774156
4799281
+
Intron
4220
chr1
4778412
4778424
AAGACC
12
-
2
GGTCTT
ENSGALT00000011058.6
4774156
4799281
+
Intron
4256
chr1
4779834
4779846
AAAAAT
12
+
2
AATAAA
ENSGALT00000011058.6
4774156
4799281
+
Intron
5678
chr1
4779843
4779856
AAAAT
13
+
2
AAATA
ENSGALT00000011058.6
4774156
4799281
+
Intron
5687
chr1
4781571
4781585
A
14
-
14
T
ENSGALT00000011058.6
4774156
4799281
+
Intron
7415
chr1
4784876
4784888
AACAT
12
+
2
ATAAC
ENSGALT00000011058.6
4774156
4799281
+
Intron
10720
chr1
4786165
4786177
AAAAT
12
-
2
TTATT
ENSGALT00000011058.6
4774156
4799281
+
Intron
12009
chr1
4788440
4788452
ACACAT
12
-
2
ATGTGT
ENSGALT00000011058.6
4774156
4799281
+
Intron
14284
chr1
4790731
4790743
ACAGCG
12
+
2
ACAGCG
ENSGALT00000011058.6
4774156
4799281
+
Exon
16575
chr1
4794705
4794717
AAAGTC
12
-
2
CTTTGA
ENSGALT00000011058.6
4774156
4799281
+
Intron
20549
chr1
4794819
4794831
AGCCTC
12
-
2
AGGCTG
ENSGALT00000011058.6
4774156
4799281
+
Intron
20663
chr1
4795165
4795179
AAAAG
14
+
2
GAAAA
ENSGALT00000011058.6
4774156
4799281
+
Intron
21009
chr1
4795721
4795734
ACCTGC
13
+
2
CCTGCA
ENSGALT00000011058.6
4774156
4799281
+
Intron
21565
chr1
4801131
4801143
AAACAT
12
-
2
GTTTAT
ENSGALT00000065471.2
4800961
4815768
-
Exon
14625
chr1
4802214
4802226
AAATG
12
+
2
AAATG
ENSGALT00000101624.1
4802016
4815722
-
Intron
13496
chr1
4802791
4802803
AAAAC
12
+
2
AAACA
ENSGALT00000101624.1
4802016
4815722
-
Intron
12919
chr1
4804205
4804218
AAAG
13
-
3
TTCT
ENSGALT00000101624.1
4802016
4815722
-
Intron
11504
chr1
4806129
4806144
A
15
+
15
A
ENSGALT00000101624.1
4802016
4815722
-
Intron
9578
chr1
4806963
4806975
AAAAG
12
-
2
TTCTT
ENSGALT00000101624.1
4802016
4815722
-
Exon
8747
chr1
4809792
4809805
A
13
+
13
A
ENSGALT00000101624.1
4802016
4815722
-
Intron
5917