Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6551 to 6575 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4987154
4987169
AAAAAT
15
+
2
AATAAA
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19095
chr1
4987683
4987698
AAAAT
15
-
3
TTTTA
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19624
chr1
4987704
4987718
AAAAC
14
-
2
TTTTG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19645
chr1
4987709
4987724
AAAAAC
15
-
2
TTTTGT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19650
chr1
4987715
4987728
AAAAC
13
-
2
TTTTG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19656
chr1
4987782
4987801
AACT
19
+
4
TAAC
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19723
chr1
4987806
4987818
AAAT
12
+
3
TAAA
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
19747
chr1
4988095
4988109
AAAAC
14
-
2
TTTTG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
20036
chr1
4988124
4988148
A
24
-
24
T
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
20065
chr1
4988246
4988258
AAATC
12
-
2
ATTTG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
20187
chr1
4988386
4988399
AAAAAC
13
+
2
AAACAA
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
20327
chr1
4988392
4988407
AAAC
15
+
3
AAAC
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
20333
chr1
4990007
4990019
A
12
-
12
T
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
21948
chr1
4990194
4990209
AT
15
+
7
AT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
22135
chr1
4990351
4990543
AAGGG
192
-
38
TCCCT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
22292
chr1
4992027
4992040
AGATGG
13
+
2
ATGGAG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
23968
chr1
4992122
4992137
AAC
15
-
5
TTG
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
24063
chr1
4992147
4992160
A
13
+
13
A
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
24088
chr1
4992159
4992174
AT
15
+
7
AT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
24100
chr1
4992169
4992184
ACATAT
15
+
2
ATATAC
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
24110
chr1
4996289
4996310
A
21
-
21
T
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
28230
chr1
4996920
4996932
ACCCAG
12
+
2
CAGACC
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
28861
chr1
4996975
4996988
AAGTAT
13
-
2
ATACTT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
28916
chr1
4997207
4997219
AATGT
12
-
2
ATTAC
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
29148
chr1
4997293
4997305
AT
12
+
6
AT
ENSGALT00000099385.1
4968059
4987014
+
Intergenic
29234