Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6826 to 6850 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5190003
5190015
AGCCTC
12
-
2
CTGAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
155109
chr1
5190375
5190388
AAC
13
-
4
TGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
155481
chr1
5190383
5190396
AAAC
13
-
3
TTGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
155489
chr1
5190400
5190414
A
14
-
14
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
155506
chr1
5192075
5192088
AAAAAT
13
-
2
TTTTTA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
157181
chr1
5192302
5192314
AATGG
12
+
2
ATGGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
157408
chr1
5192745
5192757
AAACCT
12
+
2
AAACCT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
157851
chr1
5193024
5193036
AACTC
12
+
2
CTCAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
158130
chr1
5193060
5193073
AATATT
13
+
2
TTAATA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
158166
chr1
5195594
5195606
A
12
+
12
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
160700
chr1
5195777
5195791
AAAT
14
-
3
TTAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
160883
chr1
5196416
5196432
A
16
-
16
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
161522
chr1
5197661
5197673
ACATAT
12
-
2
ATGTAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
162767
chr1
5197975
5197987
AAAAG
12
-
2
TTTCT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
163081
chr1
5199856
5199872
AATAGT
16
+
2
AATAGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
164962
chr1
5199867
5199880
AAT
13
+
4
TAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
164973
chr1
5200539
5200551
AAAGCC
12
-
2
GCTTTG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
165645
chr1
5200726
5200739
AAGGAG
13
-
2
TTCTCC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
165832
chr1
5203462
5203474
AATAGT
12
-
2
TTACTA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
168568
chr1
5203469
5203482
ACT
13
+
4
TAC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
168575
chr1
5203581
5203593
AACCAC
12
-
2
GTGGTT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
168687
chr1
5203785
5203797
AAACAG
12
-
2
TCTGTT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
168891
chr1
5205941
5205955
A
14
+
14
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
171047
chr1
5206260
5206275
ACCCC
15
+
3
CACCC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
171366
chr1
5206350
5206362
ATGCC
12
+
2
CATGC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
171456