Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6901 to 6925 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5245703
5245716
AAAGTG
13
+
2
AAGTGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
210809
chr1
5245849
5245862
ACATC
13
+
2
ATCAC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
210955
chr1
5246320
5246333
AAAT
13
-
3
TTAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211426
chr1
5246781
5246798
AAAGAG
17
+
2
AGAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211887
chr1
5246806
5246819
AAG
13
+
4
AGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211912
chr1
5246834
5246846
AAAAAG
12
+
2
GAAAAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211940
chr1
5246843
5246864
AAAAAG
21
+
3
AAAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211949
chr1
5246865
5246877
AAAAAG
12
+
2
GAAAAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211971
chr1
5246876
5246890
AAAAG
14
+
2
AAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211982
chr1
5246881
5246895
AAAAAG
14
+
2
AAAAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
211987
chr1
5246899
5246916
AAAAGG
17
+
2
AAAAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212005
chr1
5246923
5246940
AAAAGG
17
+
2
AAAAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212029
chr1
5246942
5246956
AAAAG
14
+
2
AAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212048
chr1
5246947
5246986
AAAAAG
39
+
6
AAAAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212053
chr1
5246977
5246991
AAAAG
14
+
2
AAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212083
chr1
5246982
5247014
AAAAAG
32
+
5
AAAAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212088
chr1
5247011
5247091
AAAAAG
80
+
13
AAAGAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212117
chr1
5247082
5247097
AAAAG
15
+
3
AAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212188
chr1
5247091
5247103
AAAAGG
12
+
2
GAAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212197
chr1
5247098
5247120
AAAAAG
22
+
3
AAAAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212204
chr1
5247424
5247436
AATTC
12
+
2
AATTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212530
chr1
5247841
5247854
ACCTC
13
+
2
CTCAC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
212947
chr1
5248803
5248816
ACATC
13
-
2
TGTGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
213909
chr1
5249255
5249268
AAGAGG
13
+
2
GAGGAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
214361
chr1
5250434
5250451
AAAAAT
17
-
2
TTTTTA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
215540