Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7001 to 7025 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5311209
5311221
AGATC
12
+
2
ATCAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
276315
chr1
5312264
5312276
AT
12
+
6
AT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
277370
chr1
5313665
5313678
AAACAG
13
+
2
AGAAAC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
278771
chr1
5315043
5315057
AAGGTG
14
-
2
TTCACC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
280149
chr1
5315677
5315689
AAAAC
12
+
2
AAACA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
280783
chr1
5315949
5315962
AGGGG
13
-
2
CCCTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
281055
chr1
5318072
5318085
AT
13
+
6
TA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
283178
chr1
5318196
5318209
AT
13
+
6
TA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
283302
chr1
5319325
5319338
ACACTG
13
-
2
GTCAGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
284431
chr1
5319812
5319824
ACAGTC
12
-
2
GTGACT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
284918
chr1
5320732
5320744
AAATAT
12
+
2
AAATAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
285838
chr1
5320822
5320834
AAATTC
12
+
2
TCAAAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
285928
chr1
5320988
5321010
A
22
+
22
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286094
chr1
5321313
5321325
AT
12
+
6
AT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286419
chr1
5321567
5321646
AAGGG
79
-
15
TTCCC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286673
chr1
5321644
5321660
AAGGG
16
-
3
CCTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286750
chr1
5321658
5321684
AAGGG
26
-
5
CCTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286764
chr1
5321682
5321708
AAGGG
26
-
5
CCTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286788
chr1
5321706
5321773
AAGGG
67
-
13
CCTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
286812
chr1
5322142
5322164
A
22
-
22
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
287248
chr1
5322166
5322178
AAAAC
12
-
2
TTTGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
287272
chr1
5322328
5322342
AT
14
+
7
AT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
287434
chr1
5324428
5324441
AAAT
13
-
3
TATT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
289534
chr1
5324499
5324511
ACAGAG
12
-
2
CTCTGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
289605
chr1
5324519
5324531
AAAAT
12
-
2
TTATT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
289625