Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7426 to 7450 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5552311
5552323
AAACCT
12
+
2
AAACCT
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
78701
chr1
5553162
5553175
AAAT
13
-
3
TTAT
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
77849
chr1
5554348
5554370
AAAAAG
22
+
3
AAAAAG
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
76654
chr1
5554361
5554374
AAAAG
13
+
2
AAAAG
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
76650
chr1
5554781
5554804
AAAG
23
-
5
TTTC
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
76220
chr1
5554809
5554822
A
13
-
13
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
76202
chr1
5555321
5555337
AAAAT
16
-
3
TATTT
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
75687
chr1
5555648
5555660
ATATGC
12
+
2
TGCATA
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
75364
chr1
5557810
5557845
AG
35
-
17
TC
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
73179
chr1
5557844
5557868
A
24
-
24
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
73156
chr1
5559423
5559439
A
16
-
16
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
71585
chr1
5559910
5559922
AAGTG
12
-
2
TTCAC
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
71102
chr1
5560175
5560196
A
21
-
21
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
70828
chr1
5560594
5560606
AAAGG
12
+
2
AAAGG
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
70418
chr1
5561054
5561066
AAAACT
12
+
2
CTAAAA
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
69958
chr1
5562234
5562247
AACTG
13
-
2
AGTTC
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
68777
chr1
5562348
5562362
A
14
+
14
A
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
68662
chr1
5563390
5563409
A
19
-
19
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
67615
chr1
5563815
5563827
AATAG
12
+
2
ATAGA
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
67197
chr1
5564892
5564912
AAG
20
-
6
TTC
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
66112
chr1
5564956
5564977
A
21
-
21
T
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
66047
chr1
5565293
5565306
AAAAAT
13
+
2
AAATAA
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
65718
chr1
5565914
5565926
AAAAAT
12
-
2
TTTTTA
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
65098
chr1
5565991
5566003
AACATT
12
+
2
AACATT
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
65021
chr1
5566129
5566141
AACCTC
12
-
2
TTGAGG
ENSGALT00000107656.1
5629178
5631024
-
Intergenic
64883