Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7876 to 7900 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5836595
5836607
AGCAGG
12
-
2
CCTGCT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
34250
chr1
5837731
5837743
A
12
-
12
T
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
33114
chr1
5839944
5839956
AAACCT
12
-
2
TAGGTT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
30901
chr1
5840797
5840809
A
12
+
12
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
30048
chr1
5841180
5841194
AAAAC
14
+
2
CAAAA
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
29663
chr1
5841375
5841391
ACATAT
16
-
2
TATATG
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
29466
chr1
5841393
5841414
AGATAT
21
-
3
TATATC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
29443
chr1
5842241
5842254
AAACC
13
+
2
CAAAC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
28603
chr1
5842260
5842273
A
13
+
13
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
28584
chr1
5843320
5843333
AAGATG
13
-
2
TCTTCA
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
27524
chr1
5844117
5844132
A
15
+
15
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
26725
chr1
5844162
5844181
AG
19
+
9
AG
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
26676
chr1
5845051
5845070
A
19
-
19
T
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
25787
chr1
5845395
5845408
ACCAGC
13
-
2
GCTGGT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
25449
chr1
5845534
5845556
A
22
+
22
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
25301
chr1
5845911
5845925
AACAAG
14
-
2
TCTTGT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
24932
chr1
5846210
5846233
A
23
+
23
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
24624
chr1
5847415
5847427
A
12
+
12
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
23430
chr1
5847666
5847678
AAGGG
12
-
2
CCTTC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
23179
chr1
5847679
5847694
AAGGG
15
-
3
TCCCT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
23163
chr1
5847690
5847711
AGGGG
21
-
4
CCCTC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
23146
chr1
5847722
5847736
AGAGG
14
-
2
CTCTC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
23121
chr1
5849042
5849054
AAAAAT
12
-
2
ATTTTT
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
21803
chr1
5849159
5849180
A
21
-
21
T
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
21677
chr1
5850569
5850583
AAAAC
14
-
2
TTTTG
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
20274