Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8026 to 8050 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5924474
5924487
AAATT
13
-
2
ATTTA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-33719
chr1
5924675
5924687
AAAGAG
12
+
2
AGAGAA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-33519
chr1
5927417
5927429
AAAG
12
+
3
AAAG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-30777
chr1
5927430
5927448
AAAG
18
+
4
AAGA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-30758
chr1
5927854
5927873
AAGG
19
+
4
AGGA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-30333
chr1
5928331
5928344
AAAAG
13
-
2
TTTTC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-29862
chr1
5928367
5928381
A
14
+
14
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-29825
chr1
5929184
5929200
A
16
+
16
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-29006
chr1
5929505
5929517
AAAATG
12
-
2
ATTTTC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-28689
chr1
5929908
5929938
A
30
-
30
T
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-28268
chr1
5930069
5930082
AAAAAG
13
+
2
AAAAAG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-28124
chr1
5931066
5931081
AG
15
+
7
AG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-27125
chr1
5934381
5934401
AAC
20
-
6
TTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-23805
chr1
5934396
5934408
AAAAC
12
-
2
TTGTT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-23798
chr1
5934677
5934690
ACAGCC
13
+
2
CACAGC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-23516
chr1
5935082
5935094
AAAAAT
12
-
2
TTATTT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-23112
chr1
5935250
5935263
AAAAG
13
-
2
TTTCT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-22943
chr1
5935574
5935605
A
31
-
31
T
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-22601
chr1
5935813
5935833
AAC
20
-
6
TTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-22373
chr1
5935828
5935842
AAAC
14
-
3
TTGT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-22364
chr1
5937438
5937450
AGAGGG
12
-
2
CTCCCT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-20756
chr1
5938526
5938543
A
17
+
17
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-19663
chr1
5939473
5939486
AAAGAG
13
+
2
AAAGAG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-18720
chr1
5942960
5942972
ACCCT
12
-
2
TAGGG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-15234
chr1
5944494
5944506
AAGGAT
12
-
2
CTTATC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
-13700