Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8151 to 8175 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6022896
6022921
AAAC
25
+
6
AAAC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
64690
chr1
6023012
6023024
ACACAG
12
+
2
ACACAG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
64806
chr1
6027808
6027825
A
17
+
17
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
69602
chr1
6027969
6027981
A
12
+
12
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
69763
chr1
6031384
6031396
AAAATG
12
-
2
ATTTTC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
73178
chr1
6031834
6031846
A
12
-
12
T
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
73628
chr1
6032933
6032945
AAG
12
-
4
TTC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
74727
chr1
6032982
6032994
AAAAC
12
-
2
TTTTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
74776
chr1
6035973
6035996
A
23
-
23
T
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
77767
chr1
6036068
6036083
AAAC
15
-
3
TTTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
77862
chr1
6036076
6036089
AAAAAC
13
-
2
TTTGTT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
77870
chr1
6036082
6036097
AAAC
15
-
3
TTTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
77876
chr1
6037411
6037430
AAACT
19
+
3
TAAAC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
79205
chr1
6037438
6037452
AAATG
14
+
2
AAATG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
79232
chr1
6038659
6038671
AAACC
12
+
2
AAACC
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
80453
chr1
6038871
6038883
A
12
-
12
T
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
80665
chr1
6039742
6039755
AATATC
13
+
2
TCAATA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
81536
chr1
6040130
6040142
AAATAG
12
+
2
TAGAAA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
81924
chr1
6042677
6042689
AAAAAC
12
-
2
TTTTGT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
84471
chr1
6043371
6043391
A
20
+
20
A
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
85165
chr1
6043588
6043601
AAAGGG
13
-
2
TTCCCT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
85382
chr1
6044043
6044056
AATGTG
13
+
2
TGAATG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
85837
chr1
6044138
6044151
AAAC
13
-
3
TTGT
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
85932
chr1
6046191
6046203
AATAG
12
+
2
TAGAA
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
87985
chr1
6053036
6053050
AAAC
14
-
3
TTTG
ENSGALT00000106518.1
5958206
5999104
+
Intergenic
94830