Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8301 to 8325 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6166108
6166120
AT
12
+
6
AT
ENSGALT00000078403.2
6143111
6510047
+
Intron
22997
chr1
6166776
6166790
AAAT
14
-
3
TTTA
ENSGALT00000078403.2
6143111
6510047
+
Intron
23665
chr1
6166788
6166804
AACC
16
-
4
TTGG
ENSGALT00000078403.2
6143111
6510047
+
Intron
23677
chr1
6167233
6167248
AAT
15
-
5
ATT
ENSGALT00000078403.2
6143111
6510047
+
Intron
24122
chr1
6167412
6167424
AAAATG
12
-
2
CATTTT
ENSGALT00000078403.2
6143111
6510047
+
Intron
24301
chr1
6168054
6168066
AAAAC
12
-
2
TTGTT
ENSGALT00000078403.2
6143111
6510047
+
Intron
24943
chr1
6170984
6170998
AAAAAG
14
+
2
AAAGAA
ENSGALT00000078403.2
6143111
6510047
+
Intron
27873
chr1
6170989
6171002
AAAAG
13
+
2
AAAAG
ENSGALT00000078403.2
6143111
6510047
+
Intron
27878
chr1
6172287
6172330
A
43
+
43
A
ENSGALT00000078403.2
6143111
6510047
+
Intron
29176
chr1
6172362
6172376
ACCCC
14
+
2
CCCCA
ENSGALT00000078403.2
6143111
6510047
+
Intron
29251
chr1
6172633
6172647
A
14
-
14
T
ENSGALT00000078403.2
6143111
6510047
+
Intron
29522
chr1
6174586
6174602
AT
16
+
8
AT
ENSGALT00000078403.2
6143111
6510047
+
Intron
31475
chr1
6174833
6174845
AAAAGG
12
-
2
TTTTCC
ENSGALT00000078403.2
6143111
6510047
+
Intron
31722
chr1
6175796
6175808
AAAGCC
12
+
2
AAAGCC
ENSGALT00000078403.2
6143111
6510047
+
Intron
32685
chr1
6176547
6176559
A
12
-
12
T
ENSGALT00000078403.2
6143111
6510047
+
Intron
33436
chr1
6177170
6177183
AAAGGG
13
+
2
AGGGAA
ENSGALT00000078403.2
6143111
6510047
+
Intron
34059
chr1
6178539
6178552
A
13
+
13
A
ENSGALT00000078403.2
6143111
6510047
+
Intron
35428
chr1
6178964
6178978
AC
14
+
7
AC
ENSGALT00000078403.2
6143111
6510047
+
Intron
35853
chr1
6179809
6179821
AATAGC
12
-
2
TTGCTA
ENSGALT00000078403.2
6143111
6510047
+
Intron
36698
chr1
6180915
6180927
ACCTCC
12
-
2
AGGTGG
ENSGALT00000078403.2
6143111
6510047
+
Intron
37804
chr1
6181623
6181641
AT
18
+
9
TA
ENSGALT00000078403.2
6143111
6510047
+
Intron
38512
chr1
6182811
6182825
AAT
14
+
4
AAT
ENSGALT00000078403.2
6143111
6510047
+
Intron
39700
chr1
6183081
6183093
ACAGAT
12
-
2
TATCTG
ENSGALT00000078403.2
6143111
6510047
+
Intron
39970
chr1
6183186
6183201
AACCAG
15
-
2
GTTCTG
ENSGALT00000078403.2
6143111
6510047
+
Intron
40075
chr1
6183258
6183271
A
13
+
13
A
ENSGALT00000078403.2
6143111
6510047
+
Intron
40147