Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8426 to 8450 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6259876
6259888
ACGCTC
12
-
2
CGTGAG
ENSGALT00000078403.2
6143111
6510047
+
Intron
116765
chr1
6260247
6260260
AAAGC
13
+
2
AAAGC
ENSGALT00000078403.2
6143111
6510047
+
Intron
117136
chr1
6260700
6260713
AAGG
13
+
3
AAGG
ENSGALT00000078403.2
6143111
6510047
+
Intron
117589
chr1
6261042
6261055
ACACAG
13
+
2
ACACAG
ENSGALT00000078403.2
6143111
6510047
+
Intron
117931
chr1
6261067
6261081
AAG
14
+
4
AAG
ENSGALT00000078403.2
6143111
6510047
+
Intron
117956
chr1
6261543
6261561
AAGGG
18
+
3
AGGGA
ENSGALT00000078403.2
6143111
6510047
+
Intron
118432
chr1
6261766
6261778
AAAAG
12
-
2
TTTCT
ENSGALT00000078403.2
6143111
6510047
+
Intron
118655
chr1
6261785
6261797
A
12
-
12
T
ENSGALT00000078403.2
6143111
6510047
+
Intron
118674
chr1
6262397
6262411
A
14
-
14
T
ENSGALT00000106322.1
6261960
6513417
+
Intron
437
chr1
6262749
6262779
AC
30
+
15
AC
ENSGALT00000106322.1
6261960
6513417
+
Intron
789
chr1
6263088
6263100
AGGGGG
12
+
2
GGGAGG
ENSGALT00000106322.1
6261960
6513417
+
Intron
1128
chr1
6263663
6263675
AAATG
12
+
2
AAATG
ENSGALT00000106322.1
6261960
6513417
+
Intron
1703
chr1
6263850
6263866
A
16
-
16
T
ENSGALT00000106322.1
6261960
6513417
+
Intron
1890
chr1
6263915
6263938
AAAAC
23
+
4
AAAAC
ENSGALT00000106322.1
6261960
6513417
+
Intron
1955
chr1
6264752
6264768
A
16
+
16
A
ENSGALT00000106322.1
6261960
6513417
+
Intron
2792
chr1
6265191
6265203
AAAT
12
-
3
TATT
ENSGALT00000106322.1
6261960
6513417
+
Intron
3231
chr1
6265857
6265870
AAAAAT
13
-
2
TTATTT
ENSGALT00000106322.1
6261960
6513417
+
Intron
3897
chr1
6265861
6265876
AAAAT
15
-
3
TTTTA
ENSGALT00000106322.1
6261960
6513417
+
Intron
3901
chr1
6265961
6265973
ACAT
12
-
3
GTAT
ENSGALT00000106322.1
6261960
6513417
+
Intron
4001
chr1
6265974
6265986
ACATGC
12
+
2
CACATG
ENSGALT00000106322.1
6261960
6513417
+
Intron
4014
chr1
6266407
6266422
AAAAT
15
+
3
AAAAT
ENSGALT00000106322.1
6261960
6513417
+
Intron
4447
chr1
6268544
6268556
AAAATT
12
-
2
TTTAAT
ENSGALT00000106322.1
6261960
6513417
+
Intron
6584
chr1
6268736
6268748
AAAAAT
12
-
2
ATTTTT
ENSGALT00000106322.1
6261960
6513417
+
Intron
6776
chr1
6269311
6269324
AAAAAT
13
+
2
AAAAAT
ENSGALT00000106322.1
6261960
6513417
+
Intron
7351
chr1
6269384
6269396
AAAG
12
-
3
TTTC
ENSGALT00000106322.1
6261960
6513417
+
Intron
7424