Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8576 to 8600 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6375966
6375985
A
19
+
19
A
ENSGALT00000061305.2
6317137
6508617
+
Intron
58829
chr1
6376754
6376768
ACATGC
14
-
2
TGCATG
ENSGALT00000061305.2
6317137
6508617
+
Intron
59617
chr1
6376984
6377001
A
17
-
17
T
ENSGALT00000061305.2
6317137
6508617
+
Intron
59847
chr1
6377199
6377211
AACCAG
12
+
2
CAGAAC
ENSGALT00000061305.2
6317137
6508617
+
Intron
60062
chr1
6377598
6377611
AAGGAG
13
-
2
CTTCTC
ENSGALT00000061305.2
6317137
6508617
+
Intron
60461
chr1
6378471
6378484
ACCACT
13
-
2
TAGTGG
ENSGALT00000061305.2
6317137
6508617
+
Intron
61334
chr1
6381018
6381032
A
14
-
14
T
ENSGALT00000061305.2
6317137
6508617
+
Intron
63881
chr1
6381315
6381327
ACAGGC
12
-
2
TGCCTG
ENSGALT00000061305.2
6317137
6508617
+
Intron
64178
chr1
6383474
6383494
AC
20
+
10
AC
ENSGALT00000061305.2
6317137
6508617
+
Intron
66337
chr1
6385330
6385343
AAGCAG
13
+
2
GCAGAA
ENSGALT00000061305.2
6317137
6508617
+
Intron
68193
chr1
6385840
6385854
AAC
14
-
4
TTG
ENSGALT00000061305.2
6317137
6508617
+
Intron
68703
chr1
6386320
6386332
AACACT
12
-
2
GTTAGT
ENSGALT00000061305.2
6317137
6508617
+
Intron
69183
chr1
6386641
6386655
AAGCTG
14
+
2
AAGCTG
ENSGALT00000061305.2
6317137
6508617
+
Intron
69504
chr1
6390119
6390132
AAACAC
13
-
2
TTTGTG
ENSGALT00000061305.2
6317137
6508617
+
Intron
72982
chr1
6390229
6390242
AAGGAT
13
-
2
TCCTTA
ENSGALT00000061305.2
6317137
6508617
+
Intron
73092
chr1
6390834
6390846
AAAAAC
12
+
2
AAACAA
ENSGALT00000061305.2
6317137
6508617
+
Intron
73697
chr1
6390841
6390858
AAC
17
+
5
AAC
ENSGALT00000061305.2
6317137
6508617
+
Intron
73704
chr1
6392508
6392521
AGCATC
13
+
2
TCAGCA
ENSGALT00000061305.2
6317137
6508617
+
Intron
75371
chr1
6393364
6393378
ACAGGC
14
-
2
TGCCTG
ENSGALT00000061305.2
6317137
6508617
+
Intron
76227
chr1
6393803
6393815
ACTGAG
12
+
2
CTGAGA
ENSGALT00000061305.2
6317137
6508617
+
Intron
76666
chr1
6394451
6394463
AAAGC
12
-
2
TTGCT
ENSGALT00000061305.2
6317137
6508617
+
Intron
77314
chr1
6394976
6394993
AATGAT
17
-
2
ATTATC
ENSGALT00000061305.2
6317137
6508617
+
Intron
77839
chr1
6395368
6395380
AATAGG
12
+
2
AATAGG
ENSGALT00000061305.2
6317137
6508617
+
Intron
78231
chr1
6395556
6395568
AGCCC
12
-
2
GGGCT
ENSGALT00000061305.2
6317137
6508617
+
Intron
78419
chr1
6396056
6396070
AAAAAC
14
+
2
AACAAA
ENSGALT00000061305.2
6317137
6508617
+
Intron
78919