Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8976 to 9000 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6729949
6729961
AAGAT
12
-
2
ATCTT
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
-709
chr1
6730390
6730403
AGATG
13
-
2
CATCT
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
-267
chr1
6731735
6731747
AAT
12
-
4
ATT
ENSGALT00000100397.1
6730670
6745495
+
Intron
1065
chr1
6731745
6731757
A
12
-
12
T
ENSGALT00000100397.1
6730670
6745495
+
Intron
1075
chr1
6733177
6733189
AATTAG
12
+
2
TAGAAT
ENSGALT00000100397.1
6730670
6745495
+
Intron
2507
chr1
6734232
6734244
ACATCT
12
-
2
AGATGT
ENSGALT00000100397.1
6730670
6745495
+
Intron
3562
chr1
6734591
6734603
AGAGC
12
-
2
CTCTG
ENSGALT00000100397.1
6730670
6745495
+
Intron
3921
chr1
6737788
6737800
AGAGCC
12
-
2
CTGGCT
ENSGALT00000100397.1
6730670
6745495
+
Intron
7118
chr1
6738931
6738943
AAAG
12
+
3
AAGA
ENSGALT00000100397.1
6730670
6745495
+
Intron
8261
chr1
6739873
6739887
ATCCCC
14
+
2
CCCCAT
ENSGALT00000100397.1
6730670
6745495
+
Intron
9203
chr1
6741614
6741626
AAAG
12
-
3
TTTC
ENSGALT00000100397.1
6730670
6745495
+
Intron
10944
chr1
6741729
6741741
AGCTCC
12
+
2
CAGCTC
ENSGALT00000100397.1
6730670
6745495
+
Intron
11059
chr1
6742268
6742281
A
13
-
13
T
ENSGALT00000100397.1
6730670
6745495
+
Intron
11598
chr1
6742973
6742985
ACC
12
+
4
CAC
ENSGALT00000100397.1
6730670
6745495
+
Exon
12303
chr1
6743234
6743246
AATATC
12
+
2
CAATAT
ENSGALT00000100397.1
6730670
6745495
+
Exon
12564
chr1
6743929
6743941
AATCCC
12
-
2
TGGGAT
ENSGALT00000100397.1
6730670
6745495
+
Exon
13259
chr1
6744493
6744511
AAGG
18
-
4
CCTT
ENSGALT00000100397.1
6730670
6745495
+
Exon
13823
chr1
6746880
6746892
AGGGG
12
-
2
CTCCC
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
16210
chr1
6747651
6747665
AAC
14
+
4
AAC
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
16981
chr1
6748383
6748395
AGAGGG
12
-
2
TCCCTC
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
17713
chr1
6748482
6748496
AAGG
14
+
3
GAAG
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
17812
chr1
6748764
6748776
ATCCC
12
+
2
CATCC
ENSGALT00000100397.1
6730670
6745495
+
Intergenic
18094
chr1
6749704
6749716
AAGG
12
+
3
AGGA
ENSGALT00000070595.2
6753645
6801597
-
Intergenic
51881
chr1
6751087
6751099
ACC
12
+
4
ACC
ENSGALT00000070595.2
6753645
6801597
-
Intergenic
50498
chr1
6752344
6752356
ACACAG
12
+
2
AGACAC
ENSGALT00000070595.2
6753645
6801597
-
Intergenic
49241