Showing repeats of Xenopus tropicalis (Western clawed frog)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5851 to 5875 repeats of 1426294
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6559244
6559263
AAT
19
+
6
TAA
NM_001005006
6357669
6375438
-
Intergenic
-183806
chr1
6559271
6559308
AGAT
37
-
9
TATC
NM_001005006
6357669
6375438
-
Intergenic
-183833
chr1
6559425
6559453
AAT
28
+
9
TAA
NM_001005006
6357669
6375438
-
Intergenic
-183987
chr1
6559461
6559502
AGAT
41
-
10
TATC
NM_001005006
6357669
6375438
-
Intergenic
-184023
chr1
6559646
6559670
AGAT
24
-
6
TATC
NM_001005006
6357669
6375438
-
Intergenic
-184208
chr1
6559670
6559702
AGAT
32
-
8
ATCT
NM_001005006
6357669
6375438
-
Intergenic
-184232
chr1
6559819
6559838
AAT
19
+
6
TAA
NM_001005006
6357669
6375438
-
Intergenic
-184381
chr1
6562306
6562319
AATAT
13
+
2
TAATA
NM_001005006
6357669
6375438
-
Intergenic
-186868
chr1
6563808
6563820
AAG
12
-
4
TTC
NM_001005006
6357669
6375438
-
Intergenic
-188370
chr1
6564820
6564832
AAAACC
12
-
2
GGTTTT
NM_001005006
6357669
6375438
-
Intergenic
-189382
chr1
6565040
6565052
C
12
-
12
G
NM_001005006
6357669
6375438
-
Intergenic
-189602
chr1
6565728
6565741
ACAGGT
13
+
2
CAGGTA
NM_001005006
6357669
6375438
-
Intergenic
-190290
chr1
6566708
6566720
AAGATT
12
-
2
TCTTAA
NM_001005006
6357669
6375438
-
Intergenic
-191270
chr1
6566787
6566801
AAATTT
14
+
2
ATTTAA
NM_001005006
6357669
6375438
-
Intergenic
-191349
chr1
6567247
6567260
AAGTAC
13
-
2
GTACTT
NM_001005006
6357669
6375438
-
Intergenic
-191809
chr1
6573656
6573669
AAATAT
13
-
2
TATATT
NM_001005006
6357669
6375438
-
Intergenic
-198218
chr1
6575967
6575980
AAAAAT
13
+
2
AAATAA
NM_001005006
6357669
6375438
-
Intergenic
-200529
chr1
6576274
6576286
AGGGGC
12
-
2
TGCCCC
NM_001005006
6357669
6375438
-
Intergenic
-200836
chr1
6576629
6576641
AAAAAG
12
-
2
TTTTCT
NM_001005006
6357669
6375438
-
Intergenic
-201191
chr1
6577165
6577177
AAAAGC
12
+
2
AAAAGC
NM_001005006
6357669
6375438
-
Intergenic
-201727
chr1
6577361
6577375
AT
14
+
7
TA
NM_001005006
6357669
6375438
-
Intergenic
-201923
chr1
6577926
6577938
AAGACT
12
-
2
CTTAGT
NM_001005006
6357669
6375438
-
Intergenic
-202488
chr1
6578876
6578892
C
16
-
16
G
NM_001005006
6357669
6375438
-
Intergenic
-203438
chr1
6579834
6579847
ATATCC
13
-
2
ATATGG
NM_001005006
6357669
6375438
-
Intergenic
-204396
chr1
6580186
6580204
A
18
+
18
A
NM_001005006
6357669
6375438
-
Intergenic
-204748