Showing repeats of Xenopus tropicalis (Western clawed frog)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7476 to 7500 repeats of 1426294
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
8275806
8275818
AAAGC
12
+
2
CAAAG
NM_001114262
8204111
8227464
-
Intergenic
-48342
chr1
8276159
8276171
AGATAT
12
+
2
ATATAG
NM_001114262
8204111
8227464
-
Intergenic
-48695
chr1
8277137
8277149
AGATCC
12
+
2
GATCCA
NM_001114262
8204111
8227464
-
Intergenic
-49673
chr1
8280233
8280247
AGATC
14
+
2
AGATC
NM_001114262
8204111
8227464
-
Intergenic
-52769
chr1
8280580
8280594
AAAGTG
14
-
2
TTCACT
NM_001114262
8204111
8227464
-
Intergenic
-53116
chr1
8280619
8280632
C
13
+
13
C
NM_001114262
8204111
8227464
-
Intergenic
-53155
chr1
8281185
8281197
AAACAG
12
+
2
AGAAAC
NM_001114262
8204111
8227464
-
Intergenic
-53721
chr1
8281463
8281478
AACAAT
15
+
2
TAACAA
NM_001114262
8204111
8227464
-
Intergenic
-53999
chr1
8281588
8281600
AAT
12
-
4
TAT
NM_001114262
8204111
8227464
-
Intergenic
-54124
chr1
8282181
8282199
C
18
-
18
G
NM_001114262
8204111
8227464
-
Intergenic
-54717
chr1
8288396
8288418
AT
22
+
11
TA
NM_001114262
8204111
8227464
-
Intergenic
-60932
chr1
8288771
8288786
AATTAG
15
+
2
TTAGAA
NM_001114262
8204111
8227464
-
Intergenic
-61307
chr1
8291847
8291861
AAATCC
14
+
2
AATCCA
NM_001114262
8204111
8227464
-
Intergenic
-64383
chr1
8291935
8291948
AAATAT
13
+
2
AAATAT
NM_001114262
8204111
8227464
-
Intergenic
-64471
chr1
8291965
8291983
AT
18
+
9
AT
NM_001114262
8204111
8227464
-
Intergenic
-64501
chr1
8292817
8292829
AATCAT
12
-
2
TATGAT
NM_001114262
8204111
8227464
-
Intergenic
-65353
chr1
8293025
8293037
AACTAG
12
-
2
AGTTCT
NM_001114262
8204111
8227464
-
Intergenic
-65561
chr1
8294106
8294118
AAAT
12
-
3
ATTT
NM_001114262
8204111
8227464
-
Intergenic
-66642
chr1
8294384
8294419
AT
35
+
17
TA
NM_001114262
8204111
8227464
-
Intergenic
-66920
chr1
8294532
8294545
A
13
-
13
T
NM_001114262
8204111
8227464
-
Intergenic
-67068
chr1
8294632
8294648
A
16
-
16
T
NM_001114262
8204111
8227464
-
Intergenic
-67168
chr1
8295245
8295258
AATGGG
13
-
2
CCCATT
NM_001114262
8204111
8227464
-
Intergenic
-67781
chr1
8295416
8295428
AATGC
12
-
2
CATTG
NM_001114262
8204111
8227464
-
Intergenic
-67952
chr1
8295709
8295722
A
13
+
13
A
NM_001114262
8204111
8227464
-
Intergenic
-68245
chr1
8296373
8296385
ACTC
12
-
3
GTGA
NM_001114262
8204111
8227464
-
Intergenic
-68909