Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3276 to 3300 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2397616
2397628
AAATGG
12
-
2
TTTCCA
Y39G10AR.18a
2382953
2401492
-
Intron
3864
chrI
2398293
2398312
AATT
19
+
4
TAAT
Y39G10AR.18a
2382953
2401492
-
Intron
3180
chrI
2398771
2398786
AATT
15
+
3
TAAT
Y39G10AR.18a
2382953
2401492
-
Intron
2706
chrI
2399632
2399644
AAAT
12
+
3
AAAT
Y39G10AR.18a
2382953
2401492
-
Intron
1848
chrI
2399762
2399774
AAAT
12
+
3
AAAT
Y39G10AR.18a
2382953
2401492
-
Intron
1718
chrI
2399894
2399906
AAAT
12
+
3
AAAT
Y39G10AR.18a
2382953
2401492
-
Intron
1586
chrI
2400782
2400796
AATT
14
+
3
TTAA
Y39G10AR.18a
2382953
2401492
-
Intron
696
chrI
2401168
2401187
AT
19
+
9
TA
Y39G10AR.18a
2382953
2401492
-
Intron
305
chrI
2401705
2401717
AAAAC
12
+
2
AAAAC
Y39G10AR.18a
2382953
2401492
-
Intergenic
-213
chrI
2401897
2401910
AAAAT
13
-
2
TTTAT
Y39G10AR.2a
2402232
2409987
+
Intergenic
-322
chrI
2402772
2402784
AAAATT
12
+
2
AAAATT
Y39G10AR.2a
2402232
2409987
+
Intron
540
chrI
2403651
2403663
AAAAAT
12
-
2
TTATTT
Y39G10AR.2a
2402232
2409987
+
Intron
1419
chrI
2403656
2403671
AAAT
15
-
3
TTTA
Y39G10AR.2a
2402232
2409987
+
Intron
1424
chrI
2403664
2403676
AAAAT
12
-
2
TTTAT
Y39G10AR.2a
2402232
2409987
+
Intron
1432
chrI
2406145
2406158
AAAAT
13
-
2
TTTTA
Y39G10AR.2a
2402232
2409987
+
Intron
3913
chrI
2406610
2406622
AAGC
12
+
3
AAGC
Y39G10AR.2d
2406501
2409987
+
Intron
109
chrI
2406926
2406938
AAATTC
12
-
2
TTTGAA
Y39G10AR.2d
2406501
2409987
+
Intron
425
chrI
2407092
2407104
AAATTC
12
+
2
TTCAAA
Y39G10AR.2d
2406501
2409987
+
Intron
591
chrI
2407613
2407626
ACGCG
13
-
2
GTCGC
Y39G10AR.2d
2406501
2409987
+
Intron
1112
chrI
2408618
2408630
AAACCC
12
-
2
GTTTGG
Y39G10AR.2d
2406501
2409987
+
Intron
2117
chrI
2410508
2410525
ACCCCG
17
+
2
GACCCC
Y39G10AR.26
2410190
2410261
-
Intergenic
-247
chrI
2412552
2412565
AACC
13
-
3
GTTG
Y39G10AR.26
2410190
2410261
-
Intergenic
-2291
chrI
2413084
2413097
AAGCCT
13
+
2
AAGCCT
F23C8.13a
2415133
2418521
+
Intergenic
-2036
chrI
2413110
2413132
AGCCTG
22
+
3
GCCTGA
F23C8.13a
2415133
2418521
+
Intergenic
-2001
chrI
2413127
2413143
AAGCCT
16
+
2
AGCCTA
F23C8.13a
2415133
2418521
+
Intergenic
-1990