Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3601 to 3625 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
2665105
2665117
AATAG
12
-
2
TCTAT
F32B5.17
2666384
2666468
+
Intergenic
-1267
chrI
2665170
2665193
C
23
+
23
C
F32B5.17
2666384
2666468
+
Intergenic
-1191
chrI
2665962
2665974
ACGGCG
12
+
2
CGGCGA
F32B5.17
2666384
2666468
+
Intergenic
-410
chrI
2666183
2666202
AAGCCT
19
-
3
TTAGGC
F32B5.17
2666384
2666468
+
Intergenic
-182
chrI
2666197
2666214
AGCCTG
17
-
2
AGGCTC
F32B5.17
2666384
2666468
+
Intergenic
-170
chrI
2666239
2666258
AAGCCT
19
-
3
AGGCTT
F32B5.17
2666384
2666468
+
Intergenic
-126
chrI
2666272
2666288
AAGCCT
16
-
2
CTTAGG
F32B5.17
2666384
2666468
+
Intergenic
-96
chrI
2666289
2666308
AAGCCT
19
-
3
GCTTAG
F32B5.17
2666384
2666468
+
Intergenic
-76
chrI
2669226
2669238
AAGCCT
12
-
2
AGGCTT
F32B5.6d.4
2668793
2672415
+
Intron
433
chrI
2669233
2669246
AAGCCC
13
-
2
GGCTTG
F32B5.6d.4
2668793
2672415
+
Intron
440
chrI
2669277
2669292
AAGCCT
15
-
2
CTTAGG
F32B5.6d.4
2668793
2672415
+
Intron
484
chrI
2669427
2669442
AAGCCT
15
-
2
CTTAGG
F32B5.6d.4
2668793
2672415
+
Intron
634
chrI
2669542
2669555
AGCCTG
13
-
2
TCAGGC
F32B5.6d.4
2668793
2672415
+
Intron
749
chrI
2669554
2669566
AAAACT
12
-
2
TTTTAG
F32B5.6d.4
2668793
2672415
+
Intron
761
chrI
2673545
2673560
AAGCCT
15
-
2
TTAGGC
F32B5.7b.2
2672950
2680644
-
Intron
7084
chrI
2673563
2673575
AAGCCT
12
-
2
TTAGGC
F32B5.7b.2
2672950
2680644
-
Intron
7069
chrI
2673580
2673601
AAGCCT
21
-
3
CTTAGG
F32B5.7b.2
2672950
2680644
-
Intron
7043
chrI
2673626
2673643
AAGCCT
17
-
2
GGCTTA
F32B5.7b.2
2672950
2680644
-
Intron
7001
chrI
2675586
2675598
AAATTG
12
-
2
TTTCAA
F32B5.7b.2
2672950
2680644
-
Intron
5046
chrI
2675776
2675788
AAAATT
12
-
2
AATTTT
F32B5.7b.2
2672950
2680644
-
Intron
4856
chrI
2676972
2676984
AAAATG
12
-
2
CATTTT
F32B5.7b.2
2672950
2680644
-
Intron
3660
chrI
2679415
2679432
C
17
-
17
G
F32B5.7b.2
2672950
2680644
-
Intron
1212
chrI
2680751
2680765
AAATG
14
-
2
TTTCA
F32B5.7b.1
2673049
2680644
-
Intergenic
-107
chrI
2681380
2681393
AAATTC
13
+
2
AAATTC
F32B5.7a.1
2673049
2682797
-
Intron
1404
chrI
2682650
2682665
AGCCGG
15
+
2
GCCGGA
F32B5.7a.1
2673049
2682797
-
Exon
132