Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4326 to 4350 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
3185345
3185359
AAATTT
14
+
2
AATTTA
Y54E10A.11.2
3176419
3192740
-
Intron
7381
chrI
3187106
3187118
AAAT
12
+
3
AATA
Y54E10A.11.2
3176419
3192740
-
Intron
5622
chrI
3188512
3188524
AAAATT
12
+
2
AAAATT
Y54E10A.11.2
3176419
3192740
-
Intron
4216
chrI
3188971
3188983
A
12
+
12
A
Y54E10A.11.2
3176419
3192740
-
Intron
3757
chrI
3191229
3191241
AAAATG
12
-
2
TTTTCA
Y54E10A.11.2
3176419
3192740
-
Intron
1499
chrI
3191634
3191653
AAAAG
19
+
3
AAAAG
Y54E10A.11.2
3176419
3192740
-
Intron
1087
chrI
3192981
3192995
A
14
-
14
T
Y54E10A.11.1
3176419
3192857
-
Intergenic
-124
chrI
3193453
3193466
AAAAT
13
+
2
AAAAT
Y54E10A.12
3193528
3198838
-
Intergenic
5372
chrI
3193910
3193923
A
13
-
13
T
Y54E10A.12
3193528
3198838
-
Intron
4915
chrI
3199447
3199459
AAAATG
12
-
2
TTTTCA
Y54E10A.13
3199540
3203229
-
Intergenic
3770
chrI
3199608
3199620
A
12
+
12
A
Y54E10A.13
3199540
3203229
-
Intron
3609
chrI
3200949
3200961
AAGTG
12
-
2
CTTCA
Y54E10A.13
3199540
3203229
-
Intron
2268
chrI
3201001
3201014
AAATAT
13
+
2
ATAAAT
Y54E10A.13
3199540
3203229
-
Intron
2215
chrI
3201007
3201019
AAAT
12
+
3
ATAA
Y54E10A.13
3199540
3203229
-
Intron
2210
chrI
3201525
3201537
AAGGAG
12
-
2
CTTCTC
Y54E10A.13
3199540
3203229
-
Intron
1692
chrI
3203902
3203917
A
15
-
15
T
Y54E10A.13
3199540
3203229
-
Intergenic
-673
chrI
3204013
3204025
AAAATG
12
-
2
ATTTTC
Y54E10A.13
3199540
3203229
-
Intergenic
-784
chrI
3205714
3205726
AATTAG
12
+
2
TTAGAA
Y54E10A.17.1
3206730
3209294
+
Intergenic
-1004
chrI
3206337
3206353
AAAAAT
16
+
2
AAAAAT
Y54E10A.17.1
3206730
3209294
+
Intergenic
-377
chrI
3207312
3207324
AAAAAG
12
+
2
AAAAAG
Y54E10A.17.2
3206801
3209283
+
Intron
511
chrI
3207649
3207661
AAAACT
12
+
2
AAAACT
Y54E10A.17.2
3206801
3209283
+
Intron
848
chrI
3209039
3209055
C
16
+
16
C
Y54E10A.17.2
3206801
3209283
+
Intron
2238
chrI
3209273
3209288
AAAAAT
15
+
2
AAAAAT
Y54E10A.17.2
3206801
3209283
+
Exon
2472
chrI
3209406
3209418
AAAATC
12
-
2
GATTTT
Y54E10A.17.1
3206730
3209294
+
Intergenic
2676
chrI
3210263
3210276
AAAAAT
13
-
2
TTTTAT
Y54E10A.4b
3211046
3217366
+
Intergenic
-770