Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 4476 to 4500 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
3281602
3281622
AAGCCT
20
-
3
GCTTAG
W01B11.5b
3269406
3280883
-
Intergenic
-719
chrI
3281903
3281920
AG
17
+
8
AG
W01B11.5b
3269406
3280883
-
Intergenic
-1020
chrI
3284224
3284236
AAAAAC
12
+
2
ACAAAA
W01B11.2.1
3287336
3293127
+
Intergenic
-3100
chrI
3285291
3285303
AAATTC
12
+
2
CAAATT
W01B11.2.1
3287336
3293127
+
Intergenic
-2033
chrI
3285623
3285637
AAAAAG
14
-
2
TTCTTT
W01B11.2.1
3287336
3293127
+
Intergenic
-1699
chrI
3285737
3285750
AAAAAG
13
+
2
AAAAAG
W01B11.2.1
3287336
3293127
+
Intergenic
-1586
chrI
3286130
3286142
AAAATT
12
-
2
AATTTT
W01B11.2.1
3287336
3293127
+
Intergenic
-1194
chrI
3287851
3287865
ACGGCC
14
-
2
TGGCCG
W01B11.2.2
3287382
3293127
+
Intron
469
chrI
3290574
3290587
ACCT
13
-
3
GTAG
W01B11.2.2
3287382
3293127
+
Intron
3192
chrI
3291770
3291782
AAAAGG
12
+
2
AAGGAA
W01B11.2.2
3287382
3293127
+
Exon
4388
chrI
3291777
3291790
AAGAGG
13
+
2
AGGAAG
W01B11.2.2
3287382
3293127
+
Exon
4395
chrI
3292267
3292280
ACGCCT
13
+
2
CGCCTA
W01B11.2.2
3287382
3293127
+
Intron
4885
chrI
3292598
3292611
AAGGAG
13
-
2
CTTCTC
W01B11.2.2
3287382
3293127
+
Intron
5216
chrI
3295000
3295012
AATATT
12
+
2
AATATT
W01B11.6
3293142
3294356
-
Intergenic
-644
chrI
3295347
3295359
AAAAAT
12
+
2
AAAAAT
W01B11.6
3293142
3294356
-
Intergenic
-991
chrI
3295936
3295949
AAATTG
13
-
2
AATTTC
W01B11.6
3293142
3294356
-
Intergenic
-1580
chrI
3297274
3297289
AAAAAG
15
+
2
AAAGAA
W01B11.1
3299606
3300490
+
Intergenic
-2317
chrI
3297812
3297824
A
12
+
12
A
W01B11.1
3299606
3300490
+
Intergenic
-1782
chrI
3298784
3298796
AAATTC
12
-
2
GAATTT
W01B11.1
3299606
3300490
+
Intergenic
-810
chrI
3298816
3298828
AAATTT
12
+
2
AAATTT
W01B11.1
3299606
3300490
+
Intergenic
-778
chrI
3299087
3299099
AAATTT
12
+
2
TTTAAA
W01B11.1
3299606
3300490
+
Intergenic
-507
chrI
3301942
3301955
AAGCCT
13
+
2
CCTAAG
Y44E3A.2
3302001
3307587
-
Intergenic
5632
chrI
3302260
3302273
AGCTCC
13
-
2
GAGCTG
Y44E3A.2
3302001
3307587
-
Exon
5314
chrI
3303837
3303849
AAATAC
12
+
2
AAATAC
Y44E3A.2
3302001
3307587
-
Intron
3738
chrI
3305139
3305155
AAGCCT
16
+
2
GCCTAA
Y44E3A.2
3302001
3307587
-
Intron
2432