Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5601 to 5625 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
4225005
4225017
ACGGAG
12
-
2
GTCTCC
C43E11.6a.1
4229577
4236039
+
Intergenic
-4560
chrI
4225342
4225354
AAAACG
12
-
2
TTTTCG
C43E11.6a.1
4229577
4236039
+
Intergenic
-4223
chrI
4225804
4225816
AATGGG
12
-
2
TTCCCA
C43E11.6a.1
4229577
4236039
+
Intergenic
-3761
chrI
4226017
4226032
AAAAAT
15
-
2
TTTATT
C43E11.6a.1
4229577
4236039
+
Intergenic
-3545
chrI
4226040
4226063
AAAAAT
23
+
3
AAAAAT
C43E11.6a.1
4229577
4236039
+
Intergenic
-3514
chrI
4228056
4228068
AAGAAT
12
-
2
TTCTTA
C43E11.6a.1
4229577
4236039
+
Intergenic
-1509
chrI
4229509
4229522
AAG
13
-
4
TCT
C43E11.6a.1
4229577
4236039
+
Intergenic
-55
chrI
4229595
4229607
AAC
12
+
4
ACA
C43E11.6a.1
4229577
4236039
+
Exon
18
chrI
4230892
4230904
AG
12
-
6
TC
C43E11.6c
4229577
4231042
+
Exon
1315
chrI
4231250
4231262
ACCAT
12
+
2
TACCA
C43E11.6e.2
4231143
4236032
+
Intron
107
chrI
4231673
4231686
AAT
13
+
4
AAT
C43E11.6a.2
4229888
4236032
+
Exon
1785
chrI
4231681
4231693
AATATT
12
+
2
TAATAT
C43E11.6a.2
4229888
4236032
+
Exon
1793
chrI
4233014
4233030
AAAGAG
16
+
2
AAAGAG
C43E11.6e.2
4231143
4236032
+
Intron
1871
chrI
4233950
4233963
AATGAG
13
+
2
AGAATG
C43E11.6e.2
4231143
4236032
+
Exon
2807
chrI
4233995
4234007
ACC
12
+
4
CCA
C43E11.6e.2
4231143
4236032
+
Exon
2852
chrI
4234621
4234638
AAGCCT
17
+
2
GCCTAA
C43E11.6e.2
4231143
4236032
+
Intron
3478
chrI
4234639
4234652
AAGCCT
13
+
2
GCCTAA
C43E11.6e.2
4231143
4236032
+
Intron
3496
chrI
4234647
4234664
AAGACT
17
+
2
CTAAGA
C43E11.6e.2
4231143
4236032
+
Intron
3504
chrI
4234659
4234672
AAGCCT
13
+
2
CTAAGC
C43E11.6e.2
4231143
4236032
+
Intron
3516
chrI
4235689
4235701
AATTAT
12
+
2
AATTAT
C43E11.6e.2
4231143
4236032
+
Exon
4546
chrI
4235860
4235873
AAATGG
13
-
2
TTTCCA
C43E11.6e.2
4231143
4236032
+
Exon
4717
chrI
4235921
4235933
AAAT
12
-
3
ATTT
C43E11.6e.3
4231143
4236039
+
Exon
4778
chrI
4236547
4236559
AAAATC
12
+
2
AAAATC
C43E11.5
4236954
4238617
+
Intergenic
-395
chrI
4236939
4236953
ACATCC
14
+
2
TCCACA
C43E11.5
4236954
4238617
+
Intergenic
-1
chrI
4237042
4237054
AAAGTC
12
+
2
TCAAAG
C43E11.5
4236954
4238617
+
Exon
88