Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5676 to 5700 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
4279582
4279597
AAATTC
15
+
2
AAATTC
Y47D9A.5.2
4277684
4279622
-
Exon
25
chrI
4279618
4279631
AAAAT
13
+
2
AAATA
Y47D9A.5.2
4277684
4279622
-
Exon
4
chrI
4281280
4281297
AAAT
17
-
4
ATTT
Y47D9A.5.2
4277684
4279622
-
Intergenic
-1658
chrI
4281321
4281339
AAAT
18
-
4
TATT
Y47D9A.5.2
4277684
4279622
-
Intergenic
-1699
chrI
4281344
4281358
AAAT
14
-
3
TATT
Y47D9A.5.2
4277684
4279622
-
Intergenic
-1722
chrI
4281363
4281381
AAAT
18
-
4
TATT
Y47D9A.5.2
4277684
4279622
-
Intergenic
-1741
chrI
4281386
4281400
AAAT
14
-
3
TATT
Y47D9A.5.2
4277684
4279622
-
Intergenic
-1764
chrI
4298312
4298325
AAAG
13
+
3
AAAG
Y47D9A.2b
4298259
4302235
+
Exon
53
chrI
4298378
4298393
AAG
15
-
5
TCT
Y47D9A.2b
4298259
4302235
+
Exon
119
chrI
4298745
4298759
AAATTT
14
+
2
TTTAAA
Y47D9A.2b
4298259
4302235
+
Intron
486
chrI
4299211
4299224
AAAAAG
13
+
2
AAGAAA
Y47D9A.2b
4298259
4302235
+
Intron
952
chrI
4300362
4300375
AAATC
13
+
2
AAATC
Y47D9A.2b
4298259
4302235
+
Intron
2103
chrI
4300880
4300892
AAACAC
12
-
2
TTGTGT
Y47D9A.2b
4298259
4302235
+
Exon
2621
chrI
4301133
4301145
AAAAGT
12
+
2
GTAAAA
Y47D9A.2b
4298259
4302235
+
Intron
2874
chrI
4301924
4301936
AAAAAG
12
-
2
TTTTTC
Y47D9A.2b
4298259
4302235
+
Exon
3665
chrI
4302496
4302508
AAAAAC
12
-
2
GTTTTT
Y47D9A.2a
4298184
4302243
+
Intergenic
4312
chrI
4303911
4303924
AG
13
-
6
TC
Y47D9A.1a
4303930
4308244
+
Intergenic
-6
chrI
4304422
4304434
AGAT
12
+
3
AGAT
Y47D9A.1b
4304041
4308244
+
Intron
381
chrI
4304506
4304518
AAAATC
12
-
2
GATTTT
Y47D9A.1b
4304041
4308244
+
Intron
465
chrI
4306010
4306022
AAGCAT
12
-
2
TATGCT
Y47D9A.1b
4304041
4308244
+
Exon
1969
chrI
4306044
4306056
AATC
12
+
3
CAAT
Y47D9A.1b
4304041
4308244
+
Exon
2003
chrI
4307378
4307393
AAAAT
15
+
3
TAAAA
Y47D9A.1b
4304041
4308244
+
Intron
3337
chrI
4309303
4309315
AAAATT
12
+
2
AAAATT
Y47D9A.1a
4303930
4308244
+
Intergenic
5373
chrI
4311172
4311184
AAAAAG
12
-
2
TTTTCT
T03A1.5
4311816
4311888
+
Intergenic
-632
chrI
4311902
4311915
AAAATG
13
-
2
TCATTT
T03A1.5
4311816
4311888
+
Intergenic
86