Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6851 to 6875 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
5281842
5281854
ACGGCC
12
+
2
CGGCCA
C01G8.4.1
5282085
5283944
-
Intergenic
2090
chrI
5282156
5282169
AATGAG
13
+
2
AGAATG
C01G8.4.2
5282085
5283943
-
Exon
1774
chrI
5282398
5282412
AAAATT
14
-
2
TTTAAT
C01G8.4.2
5282085
5283943
-
Intron
1531
chrI
5282672
5282684
AAAATG
12
-
2
TCATTT
C01G8.4.2
5282085
5283943
-
Exon
1259
chrI
5283365
5283377
AAATAT
12
-
2
ATATTT
C01G8.4.2
5282085
5283943
-
Intron
566
chrI
5283935
5283947
AAGTAG
12
-
2
CTTCTA
C01G8.4.2
5282085
5283943
-
Exon
-4
chrI
5284176
5284190
AAAAT
14
+
2
AATAA
C01G8.5b
5284062
5290694
-
Exon
6504
chrI
5284457
5284473
AAT
16
+
5
TAA
C01G8.5b
5284062
5290694
-
Exon
6221
chrI
5285440
5285452
AAAT
12
+
3
TAAA
C01G8.5b
5284062
5290694
-
Intron
5242
chrI
5285593
5285605
AAAAT
12
+
2
AAATA
C01G8.5b
5284062
5290694
-
Intron
5089
chrI
5286164
5286176
AACGTG
12
-
2
TTCACG
C01G8.5b
5284062
5290694
-
Exon
4518
chrI
5286293
5286306
AATTGC
13
+
2
CAATTG
C01G8.5b
5284062
5290694
-
Exon
4388
chrI
5287188
5287202
ACCGAG
14
+
2
CGAGAC
C01G8.5b
5284062
5290694
-
Intron
3492
chrI
5288577
5288590
AAGAGG
13
-
2
TCCTCT
C01G8.5b
5284062
5290694
-
Intron
2104
chrI
5288705
5288719
AAATTC
14
+
2
ATTCAA
C01G8.5b
5284062
5290694
-
Intron
1975
chrI
5288779
5288791
AAATAT
12
-
2
ATATTT
C01G8.5b
5284062
5290694
-
Intron
1903
chrI
5292002
5292014
AAACTC
12
-
2
GAGTTT
C01G8.5a
5284062
5291604
-
Intergenic
-398
chrI
5292097
5292110
AAAATC
13
-
2
TTGATT
C01G8.5a
5284062
5291604
-
Intergenic
-493
chrI
5292109
5292121
ACAGGT
12
+
2
TACAGG
C01G8.5a
5284062
5291604
-
Intergenic
-505
chrI
5293749
5293761
AAAACT
12
+
2
TAAAAC
C01G8.10
5292779
5292837
+
Intergenic
970
chrI
5293773
5293787
ACACCT
14
-
2
TAGGTG
C01G8.10
5292779
5292837
+
Intergenic
994
chrI
5293829
5293842
AGATAT
13
-
2
TCTATA
C01G8.10
5292779
5292837
+
Intergenic
1050
chrI
5294450
5294462
AAAAC
12
+
2
AAACA
C01G8.10
5292779
5292837
+
Intergenic
1671
chrI
5294673
5294686
AG
13
+
6
AG
C01G8.10
5292779
5292837
+
Intergenic
1894
chrI
5295866
5295878
AAAATG
12
+
2
ATGAAA
C01G8.6
5298755
5300331
-
Intergenic
4453