Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1776 to 1800 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1275371
1275383
AAATTG
12
-
2
AATTTC
Y48G8AR.7
1278808
1279042
+
Intergenic
-3425
chrI
1276509
1276521
AAAACT
12
-
2
TTTTAG
Y48G8AR.7
1278808
1279042
+
Intergenic
-2287
chrI
1278188
1278200
ACACC
12
-
2
GTGGT
Y48G8AR.7
1278808
1279042
+
Intergenic
-608
chrI
1280502
1280514
A
12
+
12
A
Y48G8AR.4
1279436
1279484
-
Intergenic
-1018
chrI
1280601
1280614
AG
13
+
6
GA
Y48G8AR.4
1279436
1279484
-
Intergenic
-1117
chrI
1280729
1280743
AAAATT
14
-
2
AATTTT
Y48G8AR.4
1279436
1279484
-
Intergenic
-1245
chrI
1289947
1289959
AAAATT
12
-
2
AATTTT
Y48G8AR.3
1287304
1287959
+
Intergenic
2643
chrI
1290436
1290449
ACCTGC
13
+
2
TGCACC
Y48G8AR.3
1287304
1287959
+
Intergenic
3132
chrI
1290598
1290611
AAAAAT
13
-
2
TTTTTA
Y48G8AR.3
1287304
1287959
+
Intergenic
3294
chrI
1290755
1290767
AAATTT
12
+
2
AAATTT
Y48G8AR.3
1287304
1287959
+
Intergenic
3451
chrI
1290822
1290835
AAATTT
13
+
2
TAAATT
Y48G8AR.3
1287304
1287959
+
Intergenic
3518
chrI
1291070
1291082
AAATTC
12
-
2
GAATTT
Y48G8AR.3
1287304
1287959
+
Intergenic
3766
chrI
1291983
1291995
AAGCCT
12
-
2
GGCTTA
Y48G8AR.3
1287304
1287959
+
Intergenic
4679
chrI
1292053
1292090
AAGCCT
37
-
6
TAGGCT
Y48G8AR.3
1287304
1287959
+
Intergenic
4749
chrI
1292103
1292118
AAGCCT
15
-
2
CTTAGG
Y48G8AR.3
1287304
1287959
+
Intergenic
4799
chrI
1292119
1292132
AGCCTC
13
-
2
GGCTGA
Y48G8AR.3
1287304
1287959
+
Intergenic
4815
chrI
1292133
1292146
AAGCCT
13
-
2
CTTAGG
Y48G8AR.3
1287304
1287959
+
Intergenic
4829
chrI
1293378
1293390
AAAATG
12
-
2
TTCATT
Y48G8AR.3
1287304
1287959
+
Intergenic
6074
chrI
1294320
1294333
AAAAGG
13
-
2
TTTTCC
Y48G8AR.3
1287304
1287959
+
Intergenic
7016
chrI
1294988
1295000
A
12
-
12
T
Y48G8AR.3
1287304
1287959
+
Intergenic
7684
chrI
1295669
1295681
AC
12
-
6
TG
Y48G8AR.3
1287304
1287959
+
Intergenic
8365
chrI
1297068
1297081
A
13
+
13
A
K12C11.4a
1305562
1328348
+
Intergenic
-8481
chrI
1297334
1297346
A
12
-
12
T
K12C11.4a
1305562
1328348
+
Intergenic
-8216
chrI
1298711
1298723
AATGCG
12
+
2
GCGAAT
K12C11.4a
1305562
1328348
+
Intergenic
-6839
chrI
1298761
1298773
A
12
-
12
T
K12C11.4a
1305562
1328348
+
Intergenic
-6789