Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 1926 to 1950 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1362280
1362294
A
14
-
14
T
Y92H12BL.1a.2
1348503
1359595
+
Intergenic
13777
chrI
1363106
1363118
AAAATG
12
+
2
GAAAAT
Y92H12BL.5
1365309
1376409
+
Intergenic
-2191
chrI
1363141
1363153
AAAATG
12
+
2
GAAAAT
Y92H12BL.5
1365309
1376409
+
Intergenic
-2156
chrI
1363211
1363223
AAAATG
12
+
2
GAAAAT
Y92H12BL.5
1365309
1376409
+
Intergenic
-2086
chrI
1363281
1363293
AAAATG
12
+
2
GAAAAT
Y92H12BL.5
1365309
1376409
+
Intergenic
-2016
chrI
1363748
1363761
AAAAAG
13
-
2
TCTTTT
Y92H12BL.5
1365309
1376409
+
Intergenic
-1548
chrI
1364721
1364733
A
12
+
12
A
Y92H12BL.5
1365309
1376409
+
Intergenic
-576
chrI
1365168
1365181
AAAGT
13
+
2
TAAAG
Y92H12BL.5
1365309
1376409
+
Intergenic
-128
chrI
1365341
1365355
ATC
14
+
4
CAT
Y92H12BL.5
1365309
1376409
+
Exon
32
chrI
1366470
1366483
AAAATT
13
-
2
AATTTT
Y92H12BL.5
1365309
1376409
+
Intron
1161
chrI
1366495
1366507
A
12
-
12
T
Y92H12BL.5
1365309
1376409
+
Intron
1186
chrI
1374017
1374029
A
12
-
12
T
Y92H12BL.5
1365309
1376409
+
Intron
8708
chrI
1374376
1374388
AATTCC
12
+
2
AATTCC
Y92H12BL.5
1365309
1376409
+
Intron
9067
chrI
1377386
1377398
AATTCG
12
+
2
CGAATT
Y92H12BL.4
1376942
1385057
-
Intron
7659
chrI
1377482
1377494
AAAAAG
12
+
2
AAAAAG
Y92H12BL.4
1376942
1385057
-
Intron
7563
chrI
1377708
1377722
AATT
14
+
3
TTAA
Y92H12BL.4
1376942
1385057
-
Intron
7335
chrI
1378655
1378669
AAGACT
14
+
2
CTAAGA
Y92H12BL.4
1376942
1385057
-
Intron
6388
chrI
1378685
1378699
AAGACT
14
+
2
CTAAGA
Y92H12BL.4
1376942
1385057
-
Intron
6358
chrI
1379329
1379341
AAATGC
12
-
2
TTGCAT
Y92H12BL.4
1376942
1385057
-
Exon
5716
chrI
1380849
1380862
AAAAAG
13
-
2
TTTTTC
Y92H12BL.4
1376942
1385057
-
Intron
4195
chrI
1381401
1381415
C
14
-
14
G
Y92H12BL.4
1376942
1385057
-
Intron
3642
chrI
1381885
1381897
AAAATT
12
+
2
AAAATT
Y92H12BL.4
1376942
1385057
-
Intron
3160
chrI
1382151
1382163
AAAATT
12
-
2
AATTTT
Y92H12BL.4
1376942
1385057
-
Intron
2894
chrI
1382463
1382475
AAAATG
12
-
2
CATTTT
Y92H12BL.4
1376942
1385057
-
Exon
2582
chrI
1383161
1383175
AAACCG
14
-
2
TTTCGG
Y92H12BL.4
1376942
1385057
-
Intron
1882