Showing repeats of Caenorhabditis elegans (Roundworm)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 2201 to 2225 repeats of 110476
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chrI
1606973
1606985
AAAATT
12
+
2
AAAATT
Y73E7A.2
1601838
1606926
+
Intergenic
5135
chrI
1607572
1607584
AAATTT
12
+
2
AAATTT
Y73E7A.6.1
1607658
1610041
-
Intergenic
2457
chrI
1610135
1610150
AAAAAT
15
+
2
AAAAAT
Y73E7A.6.1
1607658
1610041
-
Intergenic
-94
chrI
1612090
1612102
AAAACT
12
-
2
AGTTTT
Y73E7A.9b
1611809
1619943
+
Intron
281
chrI
1615482
1615494
AAAAT
12
-
2
TTTAT
Y73E7A.9c
1613611
1619943
+
Intron
1871
chrI
1617111
1617123
AAAATT
12
+
2
AAAATT
Y73E7A.9d
1616162
1619943
+
Intron
949
chrI
1617557
1617569
AAAATT
12
-
2
AATTTT
Y73E7A.9d
1616162
1619943
+
Intron
1395
chrI
1618427
1618439
AAAATG
12
+
2
GAAAAT
Y73E7A.9d
1616162
1619943
+
Intron
2265
chrI
1620003
1620015
A
12
-
12
T
Y73E7A.9a
1610390
1620080
+
Exon
9613
chrI
1620105
1620118
AAATT
13
+
2
TTAAA
Y73E7A.9a
1610390
1620080
+
Intergenic
9715
chrI
1620252
1620265
AAATT
13
+
2
TTAAA
Y73E7A.9a
1610390
1620080
+
Intergenic
9862
chrI
1620497
1620510
AAATT
13
+
2
TTAAA
Y73E7A.9a
1610390
1620080
+
Intergenic
10107
chrI
1620546
1620559
AAATT
13
+
2
TTAAA
Y73E7A.9a
1610390
1620080
+
Intergenic
10156
chrI
1621331
1621345
A
14
-
14
T
Y73E7A.7a.1
1621346
1628476
-
Intergenic
7131
chrI
1621343
1621355
AAC
12
-
4
TTG
Y73E7A.7b.2
1621346
1623879
-
Exon
2524
chrI
1622072
1622084
AAAATT
12
+
2
TTAAAA
Y73E7A.7b.2
1621346
1623879
-
Intron
1795
chrI
1622525
1622537
AACCCC
12
+
2
CCCCAA
Y73E7A.7b.2
1621346
1623879
-
Exon
1342
chrI
1623442
1623455
ACGGCC
13
+
2
GGCCAC
Y73E7A.7b.2
1621346
1623879
-
Intron
424
chrI
1623673
1623686
ACGGCC
13
+
2
GGCCAC
Y73E7A.7b.2
1621346
1623879
-
Intron
193
chrI
1623750
1623769
AAAT
19
+
4
AAAT
Y73E7A.7b.2
1621346
1623879
-
Intron
110
chrI
1624685
1624697
A
12
+
12
A
Y73E7A.7b.1
1621346
1625004
-
Intron
307
chrI
1625642
1625654
AAAATT
12
-
2
AATTTT
Y73E7A.7a.2
1621346
1626662
-
Intron
1008
chrI
1625802
1625815
A
13
-
13
T
Y73E7A.7b.1
1621346
1625004
-
Intergenic
-798
chrI
1626714
1626726
A
12
-
12
T
Y73E7A.7a.2
1621346
1626662
-
Intergenic
-52
chrI
1626740
1626752
A
12
+
12
A
Y73E7A.7a.1
1621346
1628476
-
Intron
1724