Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 3126 to 3150 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
1605154
1605167
AACC
13
+
3
AACC
ENSGALT00000013152.5
1605215
1614380
-
Intergenic
9213
chr1
1605490
1605502
ACAT
12
+
3
TACA
ENSGALT00000013152.5
1605215
1614380
-
Exon
8878
chr1
1606148
1606161
A
13
+
13
A
ENSGALT00000013152.5
1605215
1614380
-
Exon
8219
chr1
1607621
1607634
ACG
13
-
4
TCG
ENSGALT00000013152.5
1605215
1614380
-
Exon
6746
chr1
1608130
1608142
AAATC
12
-
2
GATTT
ENSGALT00000013152.5
1605215
1614380
-
Intron
6238
chr1
1608585
1608598
A
13
+
13
A
ENSGALT00000013152.5
1605215
1614380
-
Intron
5782
chr1
1609250
1609262
ACAGG
12
+
2
ACAGG
ENSGALT00000013152.5
1605215
1614380
-
Exon
5118
chr1
1609450
1609462
AGGATG
12
-
2
CCTCAT
ENSGALT00000013152.5
1605215
1614380
-
Intron
4918
chr1
1609914
1609927
ACACAT
13
+
2
ATACAC
ENSGALT00000013152.5
1605215
1614380
-
Intron
4453
chr1
1612275
1612288
AAACAC
13
+
2
CAAACA
ENSGALT00000013152.5
1605215
1614380
-
Intron
2092
chr1
1614076
1614088
ACACC
12
+
2
CCACA
ENSGALT00000013152.5
1605215
1614380
-
Intron
292
chr1
1614157
1614169
ACCCCC
12
+
2
CCCCCA
ENSGALT00000013152.5
1605215
1614380
-
Intron
211
chr1
1614535
1614550
ATGCGC
15
+
2
GCATGC
ENSGALT00000085290.2
1614551
1619660
+
Intergenic
-1
chr1
1615249
1615262
AATCCC
13
-
2
ATTGGG
ENSGALT00000085290.2
1614551
1619660
+
Intron
698
chr1
1615449
1615461
ATCCCC
12
-
2
ATGGGG
ENSGALT00000013166.6
1615442
1619688
+
Exon
7
chr1
1616010
1616022
AACCCG
12
-
2
GGGTTC
ENSGALT00000013166.6
1615442
1619688
+
Exon
568
chr1
1617622
1617636
AAG
14
-
4
CTT
ENSGALT00000013166.6
1615442
1619688
+
Exon
2180
chr1
1620140
1620152
ACTGGG
12
+
2
ACTGGG
ENSGALT00000089053.2
1619961
1634964
-
Intron
14812
chr1
1621075
1621087
AGG
12
-
4
TCC
ENSGALT00000089053.2
1619961
1634964
-
Intron
13877
chr1
1621946
1621958
AAAGG
12
+
2
AAGGA
ENSGALT00000089053.2
1619961
1634964
-
Intron
13006
chr1
1623264
1623278
AAAAGG
14
+
2
AAAGGA
ENSGALT00000089053.2
1619961
1634964
-
Intron
11686
chr1
1624752
1624764
AC
12
+
6
AC
ENSGALT00000089053.2
1619961
1634964
-
Intron
10200
chr1
1627093
1627106
ACCACT
13
+
2
CACTAC
ENSGALT00000089053.2
1619961
1634964
-
Exon
7858
chr1
1629857
1629869
AGATC
12
+
2
AGATC
ENSGALT00000089053.2
1619961
1634964
-
Intron
5095
chr1
1630017
1630029
AAACCC
12
+
2
CAAACC
ENSGALT00000089053.2
1619961
1634964
-
Intron
4935