Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5201 to 5225 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3660986
3660998
AAATAC
12
-
2
TGTATT
ENSGALT00000100041.1
3651097
3672122
-
Intron
11124
chr1
3661289
3661308
A
19
+
19
A
ENSGALT00000100041.1
3651097
3672122
-
Intron
10814
chr1
3661961
3662150
AAGGG
189
+
37
GGAAG
ENSGALT00000100041.1
3651097
3672122
-
Intron
9972
chr1
3664488
3664500
AGATGC
12
-
2
TCTGCA
ENSGALT00000100041.1
3651097
3672122
-
Intron
7622
chr1
3664774
3664787
AGGGG
13
-
2
TCCCC
ENSGALT00000100041.1
3651097
3672122
-
Intron
7335
chr1
3665653
3665666
AAAG
13
+
3
AAGA
ENSGALT00000100041.1
3651097
3672122
-
Intron
6456
chr1
3666065
3666081
A
16
+
16
A
ENSGALT00000100041.1
3651097
3672122
-
Intron
6041
chr1
3666365
3666384
AAAT
19
-
4
TTTA
ENSGALT00000100041.1
3651097
3672122
-
Intron
5738
chr1
3666381
3666396
AAAC
15
-
3
TTTG
ENSGALT00000100041.1
3651097
3672122
-
Intron
5726
chr1
3668323
3668335
AGAGGC
12
-
2
CTGCCT
ENSGALT00000100041.1
3651097
3672122
-
Intron
3787
chr1
3668463
3668476
A
13
-
13
T
ENSGALT00000100041.1
3651097
3672122
-
Intron
3646
chr1
3670640
3670652
A
12
-
12
T
ENSGALT00000100041.1
3651097
3672122
-
Intron
1470
chr1
3671081
3671093
AAAGAC
12
-
2
TTTGTC
ENSGALT00000100041.1
3651097
3672122
-
Intron
1029
chr1
3671248
3671260
ACGCTC
12
+
2
GCTCAC
ENSGALT00000100041.1
3651097
3672122
-
Intron
862
chr1
3671481
3671493
ACCAGC
12
+
2
CACCAG
ENSGALT00000100041.1
3651097
3672122
-
Intron
629
chr1
3672179
3672191
AGCAGG
12
-
2
CTGCTC
ENSGALT00000100041.1
3651097
3672122
-
Intergenic
-57
chr1
3672644
3672656
AAGGGC
12
+
2
AGGGCA
ENSGALT00000095181.1
3650984
3672125
-
Intergenic
-519
chr1
3673995
3674010
A
15
+
15
A
ENSGALT00000095181.1
3650984
3672125
-
Intergenic
-1870
chr1
3677081
3677093
AGCCC
12
+
2
CCAGC
ENSGALT00000095181.1
3650984
3672125
-
Intergenic
-4956
chr1
3682622
3682634
AAATAG
12
+
2
AGAAAT
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-5422
chr1
3683168
3683182
AAAGG
14
-
2
TTTCC
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-4874
chr1
3684027
3684043
AAAACT
16
+
2
AACTAA
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-4013
chr1
3684927
3684939
AAGCAT
12
+
2
CATAAG
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-3117
chr1
3685671
3685683
ACTGC
12
-
2
GTGCA
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-2373
chr1
3687968
3687980
CCCCCG
12
-
2
GGCGGG
ENSGALT00000040160.4
3688056
3728758
+
Intergenic
-76