Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5226 to 5250 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
3688229
3688241
AGGGG
12
-
2
CCTCC
ENSGALT00000101543.1
3688105
3728520
+
Intron
124
chr1
3688806
3688818
ACCTCC
12
-
2
GGTGGA
ENSGALT00000101543.1
3688105
3728520
+
Intron
701
chr1
3689171
3689183
AGAGC
12
+
2
AGCAG
ENSGALT00000101543.1
3688105
3728520
+
Intron
1066
chr1
3689819
3689831
AAGCCC
12
-
2
TTGGGC
ENSGALT00000101543.1
3688105
3728520
+
Intron
1714
chr1
3691406
3691419
AATGTG
13
-
2
TCACAT
ENSGALT00000101543.1
3688105
3728520
+
Intron
3301
chr1
3691638
3691650
ACCTC
12
+
2
CTCAC
ENSGALT00000101543.1
3688105
3728520
+
Intron
3533
chr1
3696171
3696184
AAAAAG
13
-
2
TCTTTT
ENSGALT00000101543.1
3688105
3728520
+
Intron
8066
chr1
3696179
3696192
A
13
-
13
T
ENSGALT00000101543.1
3688105
3728520
+
Intron
8074
chr1
3697707
3697719
A
12
+
12
A
ENSGALT00000101543.1
3688105
3728520
+
Intron
9602
chr1
3698278
3698290
AAAAAG
12
+
2
AGAAAA
ENSGALT00000101543.1
3688105
3728520
+
Intron
10173
chr1
3699845
3699858
AAACAC
13
-
2
GTGTTT
ENSGALT00000101543.1
3688105
3728520
+
Intron
11740
chr1
3700651
3700663
AGCTCC
12
-
2
AGCTGG
ENSGALT00000101543.1
3688105
3728520
+
Intron
12546
chr1
3702024
3702036
AATAC
12
-
2
TTGTA
ENSGALT00000101543.1
3688105
3728520
+
Intron
13919
chr1
3703883
3703912
A
29
+
29
A
ENSGALT00000101543.1
3688105
3728520
+
Intron
15778
chr1
3705944
3705956
AAGAG
12
-
2
TCTTC
ENSGALT00000101543.1
3688105
3728520
+
Intron
17839
chr1
3706509
3706522
AAAAAC
13
-
2
TTGTTT
ENSGALT00000101543.1
3688105
3728520
+
Intron
18404
chr1
3709339
3709351
AGCAGG
12
+
2
AGGAGC
ENSGALT00000101543.1
3688105
3728520
+
Intron
21234
chr1
3710439
3710458
AAAC
19
-
4
TTTG
ENSGALT00000101543.1
3688105
3728520
+
Intron
22334
chr1
3710869
3710881
ACAGG
12
-
2
TCCTG
ENSGALT00000101543.1
3688105
3728520
+
Intron
22764
chr1
3711330
3711342
AAATT
12
-
2
ATTTA
ENSGALT00000101543.1
3688105
3728520
+
Intron
23225
chr1
3712424
3712438
AAGCC
14
-
2
TGGCT
ENSGALT00000101543.1
3688105
3728520
+
Intron
24319
chr1
3713375
3713387
AAAATT
12
+
2
AAATTA
ENSGALT00000101543.1
3688105
3728520
+
Intron
25270
chr1
3716870
3716882
AAGGAG
12
+
2
GAGAAG
ENSGALT00000101543.1
3688105
3728520
+
Intron
28765
chr1
3718028
3718040
AACCC
12
+
2
AACCC
ENSGALT00000101543.1
3688105
3728520
+
Intron
29923
chr1
3718217
3718231
AAGAGC
14
+
2
AAGAGC
ENSGALT00000101543.1
3688105
3728520
+
Intron
30112