Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6051 to 6075 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4520474
4520494
A
20
+
20
A
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
95564
chr1
4520577
4520591
AAAAT
14
+
2
AAAAT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
95467
chr1
4520791
4520803
ACTG
12
-
3
GTCA
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
95255
chr1
4521152
4521174
A
22
+
22
A
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
94884
chr1
4521723
4521735
AAAG
12
-
3
CTTT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
94323
chr1
4522929
4522941
ACCTGC
12
+
2
CACCTG
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
93117
chr1
4524157
4524169
AAAC
12
-
3
TTTG
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
91889
chr1
4524170
4524186
A
16
-
16
T
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
91872
chr1
4524186
4524199
AAAAG
13
+
2
AGAAA
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
91859
chr1
4524730
4524742
AAGGAC
12
+
2
ACAAGG
ENSGALT00000015096.5
4524285
4616058
-
Intron
91316
chr1
4525708
4525720
AAAAGT
12
-
2
CTTTTA
ENSGALT00000015096.5
4524285
4616058
-
Intron
90338
chr1
4526369
4526382
AAAT
13
-
3
TATT
ENSGALT00000015096.5
4524285
4616058
-
Intron
89676
chr1
4526468
4526480
ACTG
12
-
3
CAGT
ENSGALT00000015096.5
4524285
4616058
-
Exon
89578
chr1
4531188
4531201
AGGC
13
+
3
GGCA
ENSGALT00000015096.5
4524285
4616058
-
Intron
84857
chr1
4533397
4533409
AAGGAC
12
-
2
TGTCCT
ENSGALT00000015096.5
4524285
4616058
-
Intron
82649
chr1
4536651
4536663
ACTCT
12
+
2
CTCTA
ENSGALT00000015096.5
4524285
4616058
-
Intron
79395
chr1
4536738
4536750
ACATG
12
+
2
TGACA
ENSGALT00000015096.5
4524285
4616058
-
Intron
79308
chr1
4539257
4539269
AAC
12
+
4
CAA
ENSGALT00000015096.5
4524285
4616058
-
Intron
76789
chr1
4540359
4540371
A
12
+
12
A
ENSGALT00000015096.5
4524285
4616058
-
Intron
75687
chr1
4540987
4540999
AAAGCT
12
-
2
AGCTTT
ENSGALT00000015096.5
4524285
4616058
-
Intron
75059
chr1
4541145
4541164
AC
19
+
9
CA
ENSGALT00000015096.5
4524285
4616058
-
Intron
74894
chr1
4542150
4542162
ACAG
12
+
3
CAGA
ENSGALT00000015096.5
4524285
4616058
-
Intron
73896
chr1
4542851
4542863
AGCTGC
12
+
2
CAGCTG
ENSGALT00000015096.5
4524285
4616058
-
Intron
73195
chr1
4546869
4546881
ACCTCC
12
+
2
TCCACC
ENSGALT00000015096.5
4524285
4616058
-
Intron
69177
chr1
4547023
4547036
ACAGAG
13
-
2
TGTCTC
ENSGALT00000015096.5
4524285
4616058
-
Intron
69022