Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6001 to 6025 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4468801
4468813
AAAGG
12
+
2
GGAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15559
chr1
4468806
4468819
AAAGGG
13
+
2
GGAAAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15553
chr1
4468812
4468824
AAAGG
12
+
2
GGAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15548
chr1
4468817
4468836
AAAGGG
19
+
3
GGAAAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15536
chr1
4468833
4469010
AGAGG
177
+
35
AGGAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15362
chr1
4472152
4472167
AGAGC
15
-
3
CTCTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
12205
chr1
4472440
4472452
AAACAG
12
+
2
GAAACA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
11920
chr1
4476735
4476747
ACAGC
12
+
2
CAGCA
ENSGALT00000102384.1
4475698
4484372
-
Intron
7625
chr1
4476889
4476901
ACAGGC
12
-
2
GTGCCT
ENSGALT00000102384.1
4475698
4484372
-
Exon
7471
chr1
4477584
4477601
AGAGCC
17
-
2
CTGGCT
ENSGALT00000102384.1
4475698
4484372
-
Intron
6771
chr1
4477633
4477645
AAGCC
12
-
2
CTTGG
ENSGALT00000102384.1
4475698
4484372
-
Intron
6727
chr1
4478188
4478200
AAAGG
12
+
2
GAAAG
ENSGALT00000102384.1
4475698
4484372
-
Intron
6172
chr1
4478455
4478467
AGGGG
12
+
2
GGAGG
ENSGALT00000102384.1
4475698
4484372
-
Intron
5905
chr1
4478873
4478887
ACACCC
14
-
2
GGGTGT
ENSGALT00000102384.1
4475698
4484372
-
Intron
5485
chr1
4481491
4481512
AAT
21
+
7
AAT
ENSGALT00000102384.1
4475698
4484372
-
Intron
2860
chr1
4483262
4483275
AAAAAG
13
-
2
CTTTTT
ENSGALT00000102384.1
4475698
4484372
-
Intron
1097
chr1
4484627
4484643
A
16
-
16
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-255
chr1
4485371
4485383
AAAAG
12
-
2
TTTTC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-999
chr1
4485850
4485862
AATAT
12
+
2
TAATA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-1478
chr1
4485869
4485881
AAATAT
12
+
2
TATAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-1497
chr1
4486739
4486751
AG
12
-
6
TC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-2367
chr1
4489981
4489993
AACCTC
12
+
2
ACCTCA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-5609
chr1
4490606
4490618
AAGAGC
12
-
2
CTCTTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-6234
chr1
4491477
4491489
AAAAGC
12
-
2
TTTTGC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-7105
chr1
4492041
4492053
A
12
+
12
A
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
-7669