Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5976 to 6000 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4451839
4451853
AAAAC
14
+
2
AAAAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
32519
chr1
4451844
4451858
AAAAAC
14
+
2
AAAACA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
32514
chr1
4452264
4452276
AAAAC
12
+
2
AAACA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
32096
chr1
4453058
4453070
AATAG
12
+
2
TAGAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
31302
chr1
4453511
4453548
A
37
-
37
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
30824
chr1
4454878
4454891
ACACAG
13
-
2
TGTCTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
29481
chr1
4455734
4455746
AAGTGG
12
+
2
AGTGGA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
28626
chr1
4456128
4456144
AATTCC
16
-
2
GAATTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
28228
chr1
4457803
4457818
AT
15
+
7
TA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
26554
chr1
4459278
4459291
AAAGC
13
+
2
CAAAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
25081
chr1
4460222
4460235
AAATC
13
+
2
AAATC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
24137
chr1
4461406
4461419
A
13
+
13
A
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
22953
chr1
4461528
4461541
A
13
-
13
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
22831
chr1
4461542
4461562
AAAAG
20
-
4
CTTTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
22810
chr1
4464220
4464243
AT
23
+
11
AT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
20129
chr1
4464494
4464506
ACAGCT
12
+
2
AGCTAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
19866
chr1
4464580
4464592
AAG
12
+
4
AAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
19780
chr1
4465104
4465117
AATGT
13
-
2
ACATT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
19255
chr1
4465762
4465775
AAACC
13
+
2
AAACC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
18597
chr1
4465776
4465790
AAAAC
14
+
2
CAAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
18582
chr1
4465783
4465798
AAAC
15
+
3
AAAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
18574
chr1
4465799
4465811
AAACAG
12
+
2
AAACAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
18561
chr1
4465826
4465839
AGAGG
13
-
2
CCTCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
18533
chr1
4466820
4466833
ACAGCT
13
+
2
ACAGCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
17539
chr1
4468791
4468808
AAAGGG
17
+
2
AAAGGG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
15564