Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5926 to 5950 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4414862
4414883
AT
21
+
10
TA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
69489
chr1
4415140
4415152
AAAAAG
12
+
2
AGAAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
69220
chr1
4416820
4416834
AAATGT
14
+
2
TGTAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
67538
chr1
4418162
4418187
A
25
+
25
A
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
66185
chr1
4418646
4418658
AAAGG
12
-
2
TCCTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
65714
chr1
4418995
4419007
AAGAC
12
+
2
GACAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
65365
chr1
4419009
4419021
AACAAG
12
+
2
GAACAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
65351
chr1
4420152
4420168
AAAAAT
16
-
2
TTTTAT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
64204
chr1
4420478
4420490
A
12
+
12
A
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
63882
chr1
4420751
4420763
ACATGG
12
-
2
CATGTC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
63609
chr1
4422867
4422880
AAGGAC
13
+
2
AGGACA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
61492
chr1
4423294
4423306
ACTGGC
12
-
2
CCAGTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
61066
chr1
4424096
4424108
AAT
12
-
4
TTA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
60264
chr1
4424114
4424127
A
13
-
13
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
60245
chr1
4424222
4424234
AAGTAG
12
+
2
GAAGTA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
60138
chr1
4424685
4424697
AAGGGG
12
+
2
GGAAGG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
59675
chr1
4426290
4426303
AAGAGT
13
+
2
AGAGTA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
58069
chr1
4426744
4426761
A
17
-
17
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
57611
chr1
4427886
4427898
AACAGG
12
-
2
GTTCCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
56474
chr1
4429749
4429762
ACATGC
13
+
2
ATGCAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
54610
chr1
4430757
4430769
AACGAT
12
+
2
GATAAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
53603
chr1
4430771
4430783
AGCATG
12
-
2
CATGCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
53589
chr1
4431062
4431074
ATC
12
-
4
TGA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
53298
chr1
4431911
4431923
AGCATG
12
-
2
CTCATG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
52449
chr1
4432175
4432203
A
28
+
28
A
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
52169