Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5901 to 5925 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4389804
4389816
AAT
12
+
4
AAT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
94556
chr1
4390282
4390297
AAAGAG
15
-
2
TTCTCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
94075
chr1
4390974
4390986
AAAC
12
-
3
TTTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
93386
chr1
4392465
4392477
AAAATG
12
+
2
ATGAAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
91895
chr1
4394032
4394044
AAGAAT
12
-
2
ATTCTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
90328
chr1
4396011
4396023
ACAGGG
12
-
2
TCCCTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
88349
chr1
4397144
4397156
AAATG
12
-
2
CATTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
87216
chr1
4398550
4398562
AAGGG
12
-
2
TCCCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
85810
chr1
4399652
4399665
AATGGG
13
+
2
GGGAAT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
84707
chr1
4399663
4399675
AAAGAC
12
-
2
TGTCTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
84697
chr1
4399693
4399706
AAAAG
13
-
2
TTTCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
84666
chr1
4401933
4401945
AAGCAC
12
-
2
CTTGTG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
82427
chr1
4402932
4402945
AAATC
13
+
2
AAATC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
81427
chr1
4402941
4402953
AAACCC
12
+
2
CAAACC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
81419
chr1
4403219
4403231
AACAGG
12
+
2
AGGAAC
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
81141
chr1
4403274
4403286
AAAAAG
12
-
2
TTTTCT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
81086
chr1
4406807
4406821
ACACCT
14
-
2
TGTAGG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
77551
chr1
4408793
4408805
AACATG
12
+
2
CATGAA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
75567
chr1
4410071
4410089
AAAAAT
18
+
3
AAAAAT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
74283
chr1
4410673
4410687
AATGTG
14
-
2
TTCACA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
73685
chr1
4412034
4412046
AGC
12
+
4
GCA
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
72326
chr1
4412466
4412478
AACATC
12
-
2
GATGTT
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
71894
chr1
4412675
4412687
A
12
-
12
T
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
71685
chr1
4413377
4413389
AAGCAG
12
+
2
CAGAAG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
70983
chr1
4413912
4413924
AGCAT
12
-
2
CTATG
ENSGALT00000102384.1
4475698
4484372
-
Intergenic
70448