Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 5851 to 5875 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4317980
4317998
A
18
+
18
A
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-27205
chr1
4319169
4319182
AATGGT
13
+
2
GTAATG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-28394
chr1
4319413
4319425
AACAGC
12
-
2
TGCTGT
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-28638
chr1
4320097
4320109
AGATC
12
+
2
AGATC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-29322
chr1
4323924
4323936
ACACTG
12
-
2
TCAGTG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-33149
chr1
4326268
4326281
AAACTG
13
-
2
AGTTTC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-35493
chr1
4327574
4327586
ACTATC
12
-
2
TGATAG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-36799
chr1
4328175
4328188
A
13
+
13
A
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-37400
chr1
4330408
4330421
AGATCC
13
+
2
ATCCAG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-39633
chr1
4332005
4332017
AGAGGG
12
-
2
TCTCCC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-41230
chr1
4333707
4333719
ACCAGG
12
+
2
CAGGAC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-42932
chr1
4334288
4334301
AGATCT
13
+
2
ATCTAG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-43513
chr1
4335098
4335110
AAAATG
12
+
2
ATGAAA
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-44323
chr1
4336329
4336349
A
20
+
20
A
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-45554
chr1
4340183
4340195
AAAATG
12
-
2
ATTTTC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-49408
chr1
4340829
4340843
AAAAAG
14
+
2
AAGAAA
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-50054
chr1
4340838
4340850
A
12
+
12
A
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-50063
chr1
4342399
4342411
ACTGCC
12
+
2
CCACTG
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-51624
chr1
4347832
4347847
AAC
15
-
5
GTT
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-57057
chr1
4347842
4347854
AAAAC
12
-
2
TTGTT
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-57067
chr1
4347845
4347861
AAAAAC
16
-
2
TTTTGT
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-57070
chr1
4347913
4347925
AAATC
12
+
2
AAATC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-57138
chr1
4350340
4350376
AAAT
36
-
9
TTTA
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-59565
chr1
4351448
4351460
AATG
12
-
3
ATTC
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-60673
chr1
4353983
4353995
A
12
-
12
T
ENSGALT00000048638.2
4260357
4290775
-
Intergenic
-63208