Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6151 to 6175 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4631403
4631416
AAAAG
13
-
2
TTTCT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15345
chr1
4631407
4631420
AAAAAG
13
-
2
TTTTCT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15349
chr1
4631713
4631734
AAAG
21
+
5
AAAG
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15655
chr1
4631814
4631826
AGCCGC
12
+
2
GCAGCC
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15756
chr1
4631946
4631958
A
12
-
12
T
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15888
chr1
4631961
4631977
A
16
+
16
A
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15903
chr1
4632019
4632035
C
16
+
16
C
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15961
chr1
4632053
4632065
AAAAT
12
+
2
AAATA
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-15995
chr1
4632183
4632196
ACCCGC
13
+
2
CACCCG
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16125
chr1
4632257
4632283
A
26
-
26
T
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16199
chr1
4632591
4632603
ATCCCC
12
-
2
GGGGAT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16533
chr1
4632948
4632965
AAAAAT
17
-
2
TTTTTA
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16890
chr1
4632986
4632999
A
13
-
13
T
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16928
chr1
4633002
4633014
AAAG
12
-
3
TTTC
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-16944
chr1
4633481
4633493
ACTGCC
12
-
2
GCAGTG
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-17423
chr1
4636948
4636960
AAAAGC
12
+
2
AAAGCA
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-20890
chr1
4637015
4637027
ACAGCC
12
-
2
GGCTGT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-20957
chr1
4643049
4643064
ACTCCC
15
+
2
CACTCC
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-26991
chr1
4644903
4644915
AGCTC
12
-
2
TGAGC
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-28845
chr1
4645723
4645736
AGATGG
13
-
2
TCCATC
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-29665
chr1
4648494
4648513
AGAGCC
19
-
3
CTGGCT
ENSGALT00000015096.5
4524285
4616058
-
Intergenic
-32436
chr1
4650852
4650867
A
15
+
15
A
ENSGALT00000090432.1
4683722
4688670
-
Intergenic
37803
chr1
4651519
4651534
AATGGT
15
+
2
GGTAAT
ENSGALT00000090432.1
4683722
4688670
-
Intergenic
37136
chr1
4651767
4651785
AG
18
-
9
TC
ENSGALT00000090432.1
4683722
4688670
-
Intergenic
36885
chr1
4652711
4652723
ACAGGG
12
-
2
TCCCTG
ENSGALT00000090432.1
4683722
4688670
-
Intergenic
35947