Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6201 to 6225 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4686372
4686387
AGAGG
15
-
3
TCCTC
ENSGALT00000090432.1
4683722
4688670
-
Exon
2283
chr1
4686423
4686435
AAATAG
12
+
2
AGAAAT
ENSGALT00000090432.1
4683722
4688670
-
Intron
2235
chr1
4687607
4687619
ATATC
12
-
2
ATATG
ENSGALT00000090432.1
4683722
4688670
-
Exon
1051
chr1
4687768
4687780
AGGGGG
12
+
2
GAGGGG
ENSGALT00000090432.1
4683722
4688670
-
Intron
890
chr1
4688183
4688196
AGAGGG
13
-
2
CCTCTC
ENSGALT00000090432.1
4683722
4688670
-
Intron
474
chr1
4688263
4688275
AACCC
12
+
2
CAACC
ENSGALT00000090432.1
4683722
4688670
-
Intron
395
chr1
4688817
4688836
ACCCC
19
+
3
CCCCA
ENSGALT00000058080.2
4688854
4719023
+
Intergenic
-18
chr1
4690122
4690135
AACAGG
13
-
2
TTCCTG
ENSGALT00000093161.1
4688907
4719036
+
Intron
1215
chr1
4691869
4691882
AAATC
13
-
2
ATTTG
ENSGALT00000093161.1
4688907
4719036
+
Intron
2962
chr1
4692611
4692625
A
14
+
14
A
ENSGALT00000093161.1
4688907
4719036
+
Intron
3704
chr1
4693815
4693827
AGC
12
-
4
CTG
ENSGALT00000093161.1
4688907
4719036
+
Intron
4908
chr1
4694733
4694746
AAGGAC
13
-
2
CCTTGT
ENSGALT00000093161.1
4688907
4719036
+
Intron
5826
chr1
4695915
4695927
AAGCTC
12
-
2
TTGAGC
ENSGALT00000093161.1
4688907
4719036
+
Intron
7008
chr1
4697426
4697441
AAAC
15
+
3
AAAC
ENSGALT00000093161.1
4688907
4719036
+
Intron
8519
chr1
4699987
4700000
A
13
-
13
T
ENSGALT00000093161.1
4688907
4719036
+
Intron
11080
chr1
4701205
4701217
AACTTG
12
+
2
AACTTG
ENSGALT00000093161.1
4688907
4719036
+
Intron
12298
chr1
4701740
4701752
AACAT
12
-
2
TTATG
ENSGALT00000093161.1
4688907
4719036
+
Intron
12833
chr1
4706406
4706418
AAGTGC
12
-
2
TTGCAC
ENSGALT00000093161.1
4688907
4719036
+
Intron
17499
chr1
4708028
4708040
AAGGAG
12
+
2
GAAGGA
ENSGALT00000093161.1
4688907
4719036
+
Intron
19121
chr1
4708714
4708727
AGCCC
13
-
2
TGGGC
ENSGALT00000093161.1
4688907
4719036
+
Intron
19807
chr1
4710589
4710602
ACAGTG
13
-
2
TGTCAC
ENSGALT00000093161.1
4688907
4719036
+
Intron
21682
chr1
4711806
4711818
AAAATT
12
-
2
TTAATT
ENSGALT00000093161.1
4688907
4719036
+
Intron
22899
chr1
4713748
4713762
ACCTAG
14
+
2
ACCTAG
ENSGALT00000093161.1
4688907
4719036
+
Intron
24841
chr1
4716784
4716796
AAGTGG
12
+
2
TGGAAG
ENSGALT00000093161.1
4688907
4719036
+
Intron
27877
chr1
4717795
4717808
AAGCAC
13
-
2
CTTGTG
ENSGALT00000093161.1
4688907
4719036
+
Intron
28888