Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6376 to 6400 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4885596
4885608
AGGG
12
+
3
GAGG
ENSGALT00000010889.7
4825152
4937625
+
Intron
60444
chr1
4885781
4885793
AGAGG
12
-
2
CCTCT
ENSGALT00000010889.7
4825152
4937625
+
Intron
60629
chr1
4885861
4885873
AAGG
12
-
3
TCCT
ENSGALT00000010889.7
4825152
4937625
+
Intron
60709
chr1
4888513
4888526
AAAGAC
13
+
2
AAAGAC
ENSGALT00000010889.7
4825152
4937625
+
Intron
63361
chr1
4891543
4891555
ACAGTC
12
-
2
TGTGAC
ENSGALT00000010889.7
4825152
4937625
+
Intron
66391
chr1
4894387
4894400
ACAG
13
-
3
CTGT
ENSGALT00000010889.7
4825152
4937625
+
Intron
69235
chr1
4894425
4894437
AGGG
12
+
3
GGGA
ENSGALT00000010889.7
4825152
4937625
+
Intron
69273
chr1
4897591
4897603
AAAACC
12
-
2
GGTTTT
ENSGALT00000010889.7
4825152
4937625
+
Intron
72439
chr1
4898388
4898400
AAAAGG
12
-
2
TTTTCC
ENSGALT00000010889.7
4825152
4937625
+
Intron
73236
chr1
4899618
4899630
AATTGC
12
+
2
TTGCAA
ENSGALT00000010889.7
4825152
4937625
+
Intron
74466
chr1
4899825
4899837
AATCAG
12
+
2
CAGAAT
ENSGALT00000010889.7
4825152
4937625
+
Intron
74673
chr1
4901426
4901439
ACC
13
-
4
GGT
ENSGALT00000010889.7
4825152
4937625
+
Intron
76274
chr1
4901673
4901685
ACATGC
12
+
2
ATGCAC
ENSGALT00000010889.7
4825152
4937625
+
Intron
76521
chr1
4903005
4903021
A
16
-
16
T
ENSGALT00000010889.7
4825152
4937625
+
Intron
77853
chr1
4903084
4903102
ACTGCC
18
-
3
CAGTGG
ENSGALT00000010889.7
4825152
4937625
+
Intron
77932
chr1
4904196
4904210
ACTGAT
14
+
2
CTGATA
ENSGALT00000010889.7
4825152
4937625
+
Intron
79044
chr1
4904218
4904230
AAATAC
12
+
2
TACAAA
ENSGALT00000010889.7
4825152
4937625
+
Intron
79066
chr1
4905940
4905956
AT
16
+
8
AT
ENSGALT00000010889.7
4825152
4937625
+
Intron
80788
chr1
4906361
4906377
A
16
+
16
A
ENSGALT00000010889.7
4825152
4937625
+
Intron
81209
chr1
4906375
4906389
AAG
14
+
4
AAG
ENSGALT00000010889.7
4825152
4937625
+
Intron
81223
chr1
4906699
4906711
AAGCAG
12
-
2
TGCTTC
ENSGALT00000010889.7
4825152
4937625
+
Intron
81547
chr1
4908391
4908403
AATGAG
12
-
2
TTCTCA
ENSGALT00000010889.7
4825152
4937625
+
Intron
83239
chr1
4909135
4909151
A
16
+
16
A
ENSGALT00000010889.7
4825152
4937625
+
Intron
83983
chr1
4909530
4909545
AAGAGG
15
+
2
GAAGAG
ENSGALT00000010889.7
4825152
4937625
+
Exon
84378
chr1
4911052
4911064
AAGAT
12
+
2
AAGAT
ENSGALT00000010889.7
4825152
4937625
+
Exon
85900