Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6401 to 6425 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
4911235
4911252
AAAAAG
17
+
2
AGAAAA
ENSGALT00000010889.7
4825152
4937625
+
Exon
86083
chr1
4911245
4911257
AAAG
12
+
3
AAAG
ENSGALT00000010889.7
4825152
4937625
+
Exon
86093
chr1
4911336
4911348
AAACAT
12
+
2
AAACAT
ENSGALT00000010889.7
4825152
4937625
+
Exon
86184
chr1
4911475
4911491
A
16
+
16
A
ENSGALT00000010889.7
4825152
4937625
+
Intron
86323
chr1
4911601
4911614
AAAACC
13
-
2
TTGGTT
ENSGALT00000010889.7
4825152
4937625
+
Intron
86449
chr1
4911616
4911629
AAACC
13
-
2
TTTGG
ENSGALT00000010889.7
4825152
4937625
+
Intron
86464
chr1
4912323
4912341
A
18
+
18
A
ENSGALT00000010889.7
4825152
4937625
+
Intron
87171
chr1
4914035
4914047
AG
12
-
6
TC
ENSGALT00000010889.7
4825152
4937625
+
Intron
88883
chr1
4914137
4914152
AT
15
+
7
AT
ENSGALT00000010889.7
4825152
4937625
+
Intron
88985
chr1
4914185
4914204
AT
19
+
9
AT
ENSGALT00000010889.7
4825152
4937625
+
Intron
89033
chr1
4918056
4918068
AAGAGC
12
-
2
CTTGCT
ENSGALT00000010889.7
4825152
4937625
+
Intron
92904
chr1
4918331
4918343
AAGCAG
12
+
2
GAAGCA
ENSGALT00000010889.7
4825152
4937625
+
Intron
93179
chr1
4918366
4918378
ACTGGG
12
+
2
CTGGGA
ENSGALT00000010889.7
4825152
4937625
+
Intron
93214
chr1
4919483
4919495
AAATAC
12
+
2
AATACA
ENSGALT00000010889.7
4825152
4937625
+
Intron
94331
chr1
4920528
4920549
AT
21
+
10
TA
ENSGALT00000010889.7
4825152
4937625
+
Intron
95376
chr1
4920574
4920587
AT
13
+
6
TA
ENSGALT00000010889.7
4825152
4937625
+
Intron
95422
chr1
4921368
4921381
AGCATC
13
-
2
TGATGC
ENSGALT00000010889.7
4825152
4937625
+
Intron
96216
chr1
4923516
4923528
A
12
-
12
T
ENSGALT00000010889.7
4825152
4937625
+
Intron
98364
chr1
4923952
4923966
A
14
-
14
T
ENSGALT00000010889.7
4825152
4937625
+
Intron
98800
chr1
4924036
4924048
ACATGG
12
+
2
TGGACA
ENSGALT00000010889.7
4825152
4937625
+
Intron
98884
chr1
4926007
4926019
AATG
12
+
3
TGAA
ENSGALT00000010889.7
4825152
4937625
+
Intron
100855
chr1
4927685
4927698
A
13
-
13
T
ENSGALT00000010889.7
4825152
4937625
+
Intron
102533
chr1
4928602
4928622
A
20
-
20
T
ENSGALT00000010889.7
4825152
4937625
+
Intron
103450
chr1
4929111
4929123
ACTGCT
12
-
2
CAGTAG
ENSGALT00000010889.7
4825152
4937625
+
Intron
103959
chr1
4929753
4929765
AAATT
12
-
2
TAATT
ENSGALT00000010889.7
4825152
4937625
+
Intron
104601