Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 6751 to 6775 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5144582
5144594
AAAAT
12
+
2
TAAAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
109688
chr1
5144622
5144634
AAAG
12
-
3
TTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
109728
chr1
5148743
5148757
AAGAAT
14
+
2
AAGAAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
113849
chr1
5148811
5148824
AAATAG
13
+
2
AATAGA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
113917
chr1
5148913
5148950
A
37
+
37
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
114019
chr1
5150294
5150311
A
17
-
17
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
115400
chr1
5150854
5150867
ACCTGG
13
-
2
TCCAGG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
115960
chr1
5151112
5151129
A
17
+
17
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
116218
chr1
5154917
5154935
AAAAG
18
-
3
TTTCT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
120023
chr1
5154931
5154949
A
18
-
18
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
120037
chr1
5155678
5155691
A
13
-
13
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
120784
chr1
5158244
5158256
A
12
+
12
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
123350
chr1
5158389
5158403
AAAAG
14
-
2
TTTTC
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
123495
chr1
5158747
5158766
A
19
-
19
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
123853
chr1
5158812
5158830
C
18
+
18
C
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
123918
chr1
5159665
5159677
AAAAAG
12
-
2
TTTTCT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
124771
chr1
5161147
5161159
AGAGCC
12
+
2
CCAGAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
126253
chr1
5161366
5161379
AAAAAG
13
+
2
AAAGAA
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
126472
chr1
5161749
5161761
AAAAC
12
-
2
TGTTT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
126855
chr1
5161839
5161867
A
28
-
28
T
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
126945
chr1
5162225
5162237
AAATG
12
-
2
TTCAT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
127331
chr1
5162335
5162347
AAATGT
12
+
2
AAATGT
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
127441
chr1
5162408
5162425
AAAAAG
17
+
2
AAAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
127514
chr1
5162420
5162436
A
16
+
16
A
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
127526
chr1
5162431
5162454
AAAAAG
23
+
3
AAAAAG
ENSGALT00000092391.1
5034894
5054920
+
Intergenic
127537