Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7701 to 7725 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5709355
5709374
A
19
-
19
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
65577
chr1
5709452
5709475
A
23
-
23
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
65674
chr1
5710997
5711014
AAAAAT
17
-
2
TTTTTA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
67219
chr1
5711084
5711096
A
12
-
12
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
67306
chr1
5711527
5711542
AAAAAG
15
+
2
AAAGAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
67749
chr1
5713321
5713336
A
15
-
15
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
69543
chr1
5713365
5713387
A
22
+
22
A
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
69587
chr1
5713385
5713399
AAGG
14
+
3
AAGG
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
69607
chr1
5714293
5714305
AATAT
12
-
2
TTATA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
70515
chr1
5714829
5714841
AAGGAT
12
+
2
TAAGGA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
71051
chr1
5716388
5716411
AAT
23
+
7
ATA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
72610
chr1
5717747
5717759
AAACAG
12
-
2
TTTCTG
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
73969
chr1
5718014
5718026
AAAAT
12
+
2
AAAAT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
74236
chr1
5718024
5718046
AAAT
22
+
5
AATA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
74246
chr1
5718050
5718062
AAAAT
12
+
2
AAATA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
74272
chr1
5719865
5719877
AGAGGG
12
-
2
TCTCCC
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
76087
chr1
5719875
5719888
ACCCC
13
+
2
CCCCA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
76097
chr1
5720229
5720255
A
26
-
26
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
76451
chr1
5720306
5720319
AAAACT
13
+
2
CTAAAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
76528
chr1
5720689
5720701
AAGGAC
12
-
2
GTCCTT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
76911
chr1
5722244
5722256
ACAGTG
12
-
2
CTGTCA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
78466
chr1
5722685
5722698
AATTGC
13
+
2
ATTGCA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
78907
chr1
5723084
5723096
ACT
12
-
4
AGT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
79306
chr1
5723144
5723162
AAAAC
18
-
3
TTGTT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
79366
chr1
5724314
5724326
AT
12
+
6
TA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
80536