Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 7751 to 7775 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
5738532
5738554
AGAT
22
-
5
ATCT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
94754
chr1
5738565
5738578
AGAT
13
-
3
TCTA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
94787
chr1
5739068
5739080
AAAAAG
12
+
2
AGAAAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
95290
chr1
5744498
5744515
AAT
17
+
5
AAT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
100720
chr1
5744553
5744567
AAAC
14
-
3
TTTG
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
100775
chr1
5744645
5744660
AAAC
15
-
3
TTTG
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
100867
chr1
5745418
5745433
A
15
-
15
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
101640
chr1
5745954
5745968
A
14
-
14
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
102176
chr1
5747087
5747099
A
12
+
12
A
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
103309
chr1
5747932
5747950
A
18
-
18
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
104154
chr1
5748483
5748495
AAAAAG
12
-
2
TTTTCT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
104705
chr1
5748497
5748509
A
12
+
12
A
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
104719
chr1
5751749
5751763
ACAGT
14
-
2
TGTAC
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
107971
chr1
5752568
5752582
A
14
-
14
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
108790
chr1
5752605
5752617
AAAAAG
12
-
2
CTTTTT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
108827
chr1
5753635
5753647
AAAAAT
12
-
2
TATTTT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
109857
chr1
5753864
5753884
AAAAT
20
-
4
ATTTT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
110086
chr1
5753875
5753888
AAAAAT
13
-
2
TTTTAT
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
110097
chr1
5754147
5754160
AAATTT
13
+
2
TTTAAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
110369
chr1
5754155
5754193
AAAT
38
+
9
TAAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
110377
chr1
5754709
5754725
AAAT
16
+
4
TAAA
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
110931
chr1
5755249
5755261
AAC
12
-
4
TTG
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
111471
chr1
5755356
5755371
A
15
-
15
T
ENSGALT00000043234.2
5643778
5643835
+
Intergenic
111578
chr1
5756187
5756200
A
13
+
13
A
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
114657
chr1
5756566
5756580
AAC
14
+
4
AAC
ENSGALT00000090663.1
5868113
5870857
-
Intergenic
114277