Showing repeats of Gallus gallus (Chicken)
Filter Panel
Chromosome
Start
Stop
Repeat Class
---------
A
C
AC
AG
AT
CG
AAC
AAG
AAT
ACC
ACG
ACT
AGC
AGG
ATC
CCG
AAAC
AAAG
AAAT
AACC
AACG
AACT
AAGC
AAGG
AAGT
AATC
AATG
AATT
ACAG
ACAT
ACCC
ACCG
ACCT
ACGC
ACGG
ACGT
ACTC
ACTG
AGAT
AGCC
AGCG
AGCT
AGGC
AGGG
ATCC
ATCG
ATGC
CCCG
CCGG
AAAAC
AAAAG
AAAAT
AAACC
AAACG
AAACT
AAAGC
AAAGG
AAAGT
AAATC
AAATG
AAATT
AACAC
AACAG
AACAT
AACCC
AACCG
AACCT
AACGC
AACGG
AACGT
AACTC
AACTG
AACTT
AAGAC
AAGAG
AAGAT
AAGCC
AAGCG
AAGCT
AAGGC
AAGGG
AAGGT
AAGTC
AAGTG
AATAC
AATAG
AATAT
AATCC
AATCG
AATCT
AATGC
AATGG
AATGT
AATTC
ACACC
ACACG
ACACT
ACAGC
ACAGG
ACAGT
ACATC
ACATG
ACCAG
ACCAT
ACCCC
ACCCG
ACCCT
ACCGC
ACCGG
ACCGT
ACCTC
ACCTG
ACGAG
ACGAT
ACGCC
ACGCG
ACGCT
ACGGC
ACGGG
ACGTC
ACTAG
ACTAT
ACTCC
ACTCG
ACTCT
ACTGC
ACTGG
AGAGC
AGAGG
AGATC
AGATG
AGCAT
AGCCC
AGCCG
AGCCT
AGCGC
AGCGG
AGCTC
AGGAT
AGGCC
AGGCG
AGGGC
AGGGG
ATATC
ATCCC
ATCCG
ATCGC
ATGCC
CCCCG
CCCGG
CCGCG
AAAAAC
AAAAAG
AAAAAT
AAAACC
AAAACG
AAAACT
AAAAGC
AAAAGG
AAAAGT
AAAATC
AAAATG
AAAATT
AAACAC
AAACAG
AAACAT
AAACCC
AAACCG
AAACCT
AAACGC
AAACGG
AAACGT
AAACTC
AAACTG
AAACTT
AAAGAC
AAAGAG
AAAGAT
AAAGCC
AAAGCG
AAAGCT
AAAGGC
AAAGGG
AAAGGT
AAAGTC
AAAGTG
AAAGTT
AAATAC
AAATAG
AAATAT
AAATCC
AAATCG
AAATCT
AAATGC
AAATGG
AAATGT
AAATTC
AAATTG
AAATTT
AACAAG
AACAAT
AACACC
AACACG
AACACT
AACAGC
AACAGG
AACAGT
AACATC
AACATG
AACATT
AACCAC
AACCAG
AACCAT
AACCCC
AACCCG
AACCCT
AACCGC
AACCGG
AACCGT
AACCTC
AACCTG
AACCTT
AACGAC
AACGAG
AACGAT
AACGCC
AACGCG
AACGCT
AACGGC
AACGGG
AACGGT
AACGTC
AACGTG
AACGTT
AACTAC
AACTAG
AACTAT
AACTCC
AACTCG
AACTCT
AACTGC
AACTGG
AACTGT
AACTTC
AACTTG
AAGAAT
AAGACC
AAGACG
AAGACT
AAGAGC
AAGAGG
AAGAGT
AAGATC
AAGATG
AAGATT
AAGCAC
AAGCAG
AAGCAT
AAGCCC
AAGCCG
AAGCCT
AAGCGC
AAGCGG
AAGCGT
AAGCTC
AAGCTG
AAGCTT
AAGGAC
AAGGAG
AAGGAT
AAGGCC
AAGGCG
AAGGCT
AAGGGC
AAGGGG
AAGGGT
AAGGTC
AAGGTG
AAGTAC
AAGTAG
AAGTAT
AAGTCC
AAGTCG
AAGTCT
AAGTGC
AAGTGG
AAGTGT
AATACC
AATACG
AATACT
AATAGC
AATAGG
AATAGT
AATATC
AATATG
AATATT
AATCAC
AATCAG
AATCAT
AATCCC
AATCCG
AATCCT
AATCGC
AATCGG
AATCGT
AATCTC
AATCTG
AATGAC
AATGAG
AATGAT
AATGCC
AATGCG
AATGCT
AATGGC
AATGGG
AATGGT
AATGTC
AATGTG
AATTAC
AATTAG
AATTAT
AATTCC
AATTCG
AATTGC
ACACAG
ACACAT
ACACCC
ACACCG
ACACCT
ACACGC
ACACGG
ACACGT
ACACTC
ACACTG
ACAGAG
ACAGAT
ACAGCC
ACAGCG
ACAGCT
ACAGGC
ACAGGG
ACAGGT
ACAGTC
ACAGTG
ACATAG
ACATAT
ACATCC
ACATCG
ACATCT
ACATGC
ACATGG
ACATGT
ACCACG
ACCACT
ACCAGC
ACCAGG
ACCAGT
ACCATC
ACCATG
ACCCAG
ACCCAT
ACCCCC
ACCCCG
ACCCCT
ACCCGC
ACCCGG
ACCCGT
ACCCTC
ACCCTG
ACCGAG
ACCGAT
ACCGCC
ACCGCG
ACCGCT
ACCGGC
ACCGGG
ACCGGT
ACCGTC
ACCGTG
ACCTAG
ACCTAT
ACCTCC
ACCTCG
ACCTCT
ACCTGC
ACCTGG
ACGACT
ACGAGC
ACGAGG
ACGAGT
ACGATC
ACGATG
ACGCAG
ACGCAT
ACGCCC
ACGCCG
ACGCCT
ACGCGC
ACGCGG
ACGCGT
ACGCTC
ACGCTG
ACGGAG
ACGGAT
ACGGCC
ACGGCG
ACGGCT
ACGGGC
ACGGGG
ACGTAG
ACGTAT
ACGTCC
ACGTCG
ACGTGC
ACTAGC
ACTAGG
ACTAGT
ACTATC
ACTATG
ACTCAG
ACTCAT
ACTCCC
ACTCCG
ACTCCT
ACTCGC
ACTCGG
ACTCTC
ACTCTG
ACTGAG
ACTGAT
ACTGCC
ACTGCG
ACTGCT
ACTGGC
ACTGGG
AGAGAT
AGAGCC
AGAGCG
AGAGCT
AGAGGC
AGAGGG
AGATAT
AGATCC
AGATCG
AGATCT
AGATGC
AGATGG
AGCAGG
AGCATC
AGCATG
AGCCAT
AGCCCC
AGCCCG
AGCCCT
AGCCGC
AGCCGG
AGCCTC
AGCCTG
AGCGAT
AGCGCC
AGCGCG
AGCGCT
AGCGGC
AGCGGG
AGCTAT
AGCTCC
AGCTCG
AGCTGC
AGGATC
AGGATG
AGGCAT
AGGCCC
AGGCCG
AGGCCT
AGGCGC
AGGCGG
AGGGAT
AGGGCC
AGGGCG
AGGGGC
AGGGGG
ATATCC
ATATCG
ATATGC
ATCATG
ATCCCC
ATCCCG
ATCCGC
ATCCGG
ATCGCC
ATCGCG
ATCGGC
ATGCCC
ATGCGC
ATGGCC
CCCCCG
CCCCGG
CCCGCG
CCCGGG
CCGCGG
CCGGCG
Repeat Length
-
Gene Name
Annotation
---------
Exon
Intron
Intergenic
Genic
Distance from TSS
-
Showing 8901 to 8925 repeats of 1284974
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Export Table
Chromosome
Start
Stop
Repeat Class
Repeat Length
Strand
# Units
Actual Repeat
Gene Name
Gene Start
Gene Stop
Gene Strand
Annotation
Distance from TSS
chr1
6652077
6652090
AAAAGG
13
+
2
AGGAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
24921
chr1
6652592
6652604
AAAATC
12
-
2
TGATTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
24407
chr1
6654371
6654383
AATGAG
12
+
2
AATGAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
22628
chr1
6655444
6655456
AAAAGT
12
+
2
GTAAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
21555
chr1
6658223
6658235
A
12
+
12
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
18776
chr1
6659368
6659380
AATTAT
12
+
2
TAATTA
ENSGALT00000082280.2
6571226
6677011
-
Intron
17631
chr1
6659691
6659703
AAAAG
12
+
2
AAGAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
17308
chr1
6659724
6659746
AAAAT
22
+
4
AAAAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
17265
chr1
6659741
6659758
AAT
17
+
5
AAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
17253
chr1
6659753
6659770
AAAAT
17
+
3
AATAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
17241
chr1
6661323
6661335
AAAAAC
12
-
2
TTGTTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
15676
chr1
6661328
6661343
AAAC
15
-
3
TTTG
ENSGALT00000082280.2
6571226
6677011
-
Intron
15668
chr1
6661660
6661672
A
12
+
12
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
15339
chr1
6663039
6663051
AAGTAC
12
-
2
ACTTGT
ENSGALT00000082280.2
6571226
6677011
-
Intron
13960
chr1
6663991
6664006
A
15
+
15
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
13005
chr1
6664288
6664300
AGCTAT
12
+
2
TATAGC
ENSGALT00000082280.2
6571226
6677011
-
Intron
12711
chr1
6666068
6666091
AAAT
23
+
5
AAAT
ENSGALT00000082280.2
6571226
6677011
-
Intron
10920
chr1
6666628
6666640
AAATAT
12
-
2
TATATT
ENSGALT00000082280.2
6571226
6677011
-
Intron
10371
chr1
6669810
6669822
AGAGGC
12
+
2
AGGCAG
ENSGALT00000082280.2
6571226
6677011
-
Intron
7189
chr1
6672011
6672023
AAAATC
12
+
2
ATCAAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
4988
chr1
6672470
6672482
AAAAAT
12
-
2
TTATTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
4529
chr1
6673580
6673592
AAAAAC
12
-
2
GTTTTT
ENSGALT00000082280.2
6571226
6677011
-
Intron
3419
chr1
6673905
6673922
A
17
+
17
A
ENSGALT00000082280.2
6571226
6677011
-
Intron
3089
chr1
6675192
6675204
AAGAG
12
+
2
GAGAA
ENSGALT00000082280.2
6571226
6677011
-
Intron
1807
chr1
6676365
6676377
ACAGAT
12
-
2
TATCTG
ENSGALT00000082280.2
6571226
6677011
-
Intron
634